{ "type": "genome", "identifier": "GCA_004962735.1", "organism": "Mesorhizobium sp.", "title": "Mesorhizobium sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Cook Lab - University of California at Davis", "publication": [ {} ], "properties": { "assembly_accession": "GCA_004962735.1", "bioproject": "PRJNA453501", "biosample": "SAMN11348833", "wgs_master": "SUGR00000000.1", "refseq_category": "na", "taxid": "1871066", "species_taxid": "1871066", "organism_name": "Mesorhizobium sp.", "infraspecific_name": "", "isolate": "N.Ca.IN.006.10.1", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/04/30", "asm_name": "ASM496273v1", "submitter": "Cook Lab - University of California at Davis", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/962/735/GCA_004962735.1_ASM496273v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-04-30", "dateModified": "2019-04-30", "datePublished": "2019-04-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Mesorhizobium sp." ], "sample_taxid": [ "1871066" ], "sample_host_organism": [ "Cicer arietinum" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "India: Uttar Pradesh, Deoria, Savreji" ], "sample_host_location_id": [], "data_size": "2.051 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "7195485", "Number of Sequences": "1367", "Longest Sequences (bp)": "345781", "N50 (bp)": "110894", "Gap Ratio (%)": "0.012577", "GCcontent (%)": "61.9", "Number of CDSs": "6683", "Average Protein Length": "288.8", "Coding Ratio (%)": "80.5", "Number of rRNAs": "3", "Number of tRNAs": "54", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mesorhizobium wenxiniae", "strain": "strain=WYCCWR 10195", "accession": "GCA_002284535.1", "taxid": 2014805, "species_taxid": 2014805, "relation_to_type": "type", "validated": true, "ani": 93.4242, "matched_fragments": 1719, "total_fragments": 2209, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium temperatum", "strain": "strain=SDW018", "accession": "GCA_002284575.1", "taxid": 241416, "species_taxid": 241416, "relation_to_type": "type", "validated": true, "ani": 92.9483, "matched_fragments": 1683, "total_fragments": 2209, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium muleiense", "strain": "strain=CGMCC 1.11022", "accession": "GCA_900099905.1", "taxid": 1004279, "species_taxid": 1004279, "relation_to_type": "type", "validated": true, "ani": 92.8699, "matched_fragments": 1700, "total_fragments": 2209, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium onobrychidis", "strain": "strain=OM4", "accession": "GCA_024707545.1", "taxid": 2775404, "species_taxid": 2775404, "relation_to_type": "type", "validated": true, "ani": 92.5974, "matched_fragments": 1714, "total_fragments": 2209, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium metallidurans", "strain": "strain=STM 2683", "accession": "GCA_000350085.1", "taxid": 489722, "species_taxid": 489722, "relation_to_type": "type", "validated": true, "ani": 87.2474, "matched_fragments": 1379, "total_fragments": 2209, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium helmanticense", "strain": 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