{ "type": "genome", "identifier": "GCA_004963375.1", "organism": "Mesorhizobium sp.", "title": "Mesorhizobium sp.", "description": "derived from metagenome; fragmented assembly", "data type": "Genome sequencing and assembly", "organization": "Cook Lab - University of California at Davis", "publication": [ {} ], "properties": { "assembly_accession": "GCA_004963375.1", "bioproject": "PRJNA453501", "biosample": "SAMN11348734", "wgs_master": "SUDZ00000000.1", "refseq_category": "na", "taxid": "1871066", "species_taxid": "1871066", "organism_name": "Mesorhizobium sp.", "infraspecific_name": "", "isolate": "N.Ca.ET.078.01.2", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/05/01", "asm_name": "ASM496337v1", "submitter": "Cook Lab - University of California at Davis", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/004/963/375/GCA_004963375.1_ASM496337v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-05-01", "dateModified": "2019-05-01", "datePublished": "2019-05-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Mesorhizobium sp." ], "sample_taxid": [ "1871066" ], "sample_host_organism": [ "Cicer arietinum" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Ethiopia: Amhara, South Gonder, Ibnat" ], "sample_host_location_id": [], "data_size": "0.873 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 35.77, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2909787", "Number of Sequences": "2551", "Longest Sequences (bp)": "12643", "N50 (bp)": "1538", "Gap Ratio (%)": "0.495431", "GCcontent (%)": "62.1", "Number of CDSs": "1658", "Average Protein Length": "180.7", "Coding Ratio (%)": "30.9", "Number of rRNAs": "3", "Number of tRNAs": "30", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mesorhizobium silamurunense", "strain": "strain=CCBAU 01550", "accession": "GCA_014843825.1", "taxid": 499528, "species_taxid": 499528, "relation_to_type": "type", "validated": true, "ani": 86.5438, "matched_fragments": 93, "total_fragments": 140, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium tamadayense", "strain": "strain=DSM 28320", "accession": "GCA_003863365.1", "taxid": 425306, "species_taxid": 425306, "relation_to_type": "type", "validated": true, "ani": 85.7102, "matched_fragments": 87, "total_fragments": 140, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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