{
    "type": "genome",
    "identifier": "GCA_005239385.1",
    "organism": "Nitrospina sp.",
    "title": "Nitrospina sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Princeton University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_005239385.1",
        "bioproject": "PRJNA505148",
        "biosample": "SAMN10411419",
        "wgs_master": "RSAC00000000.1",
        "refseq_category": "na",
        "taxid": "2024844",
        "species_taxid": "2024844",
        "organism_name": "Nitrospina sp.",
        "infraspecific_name": "",
        "isolate": "ETSP2013-BB2-NOB-2",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/05/09",
        "asm_name": "ASM523938v1",
        "submitter": "Princeton University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/239/385/GCA_005239385.1_ASM523938v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-05-09",
    "dateModified": "2019-05-09",
    "datePublished": "2019-05-09",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Nitrospina sp."
        ],
        "sample_taxid": [
            "2024844"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Chile"
        ],
        "sample_host_location_id": [],
        "data_size": "0.634 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 91.67,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2188838",
        "Number of Sequences": "186",
        "Longest Sequences (bp)": "44996",
        "N50 (bp)": "16250",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "45.6",
        "Number of CDSs": "1989",
        "Average Protein Length": "289.0",
        "Coding Ratio (%)": "78.8",
        "Number of rRNAs": "1",
        "Number of tRNAs": "43",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 91.67,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_002731985.1",
                "gtdb_species": "s__Nitromaritima sp002731985",
                "ani": 98.9856,
                "matched_fragments": 403,
                "total_fragments": 638,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospinota;c__Nitrospinia;o__Nitrospinales;f__Nitrospinaceae;g__Nitromaritima",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.05",
                "min_intra_species_ani": "98.90",
                "mean_intra_species_af": "0.81",
                "min_intra_species_af": "0.77",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCA_003451695.1",
                "gtdb_species": "s__Nitromaritima sp003451695",
                "ani": 83.5649,
                "matched_fragments": 333,
                "total_fragments": 638,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospinota;c__Nitrospinia;o__Nitrospinales;f__Nitrospinaceae;g__Nitromaritima",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.02",
                "min_intra_species_ani": "97.02",
                "mean_intra_species_af": "0.79",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_000372225.1",
                "gtdb_species": "s__Nitromaritima sp000372225",
                "ani": 77.115,
                "matched_fragments": 85,
                "total_fragments": 638,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospinota;c__Nitrospinia;o__Nitrospinales;f__Nitrospinaceae;g__Nitromaritima",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018697205.1",
                "gtdb_species": "s__Nitromaritima sp018697205",
                "ani": 76.5567,
                "matched_fragments": 58,
                "total_fragments": 638,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospinota;c__Nitrospinia;o__Nitrospinales;f__Nitrospinaceae;g__Nitromaritima",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.64",
                "min_intra_species_ani": "99.64",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Nitrospinota",
        "c__Nitrospinia",
        "o__Nitrospinales",
        "f__VA-1",
        "g__Nitromaritima",
        "s__Nitromaritima sp002731985"
    ],
    "_genome_taxon": [
        "Nitrospina",
        "sp.",
        "d__Bacteria",
        "p__Nitrospinota",
        "c__Nitrospinia",
        "o__Nitrospinales",
        "f__VA-1",
        "g__Nitromaritima",
        "s__Nitromaritima sp002731985",
        "Bacteria",
        "Nitrospinota",
        "Nitrospinia",
        "Nitrospinales",
        "VA-1",
        "Nitromaritima",
        "Nitromaritima",
        "sp002731985"
    ],
    "_meo": [
        {
            "id": "MEO_0000041",
            "label": "marine water"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}