{ "type": "genome", "identifier": "GCA_005776455.1", "organism": "Actinomycetota bacterium", "title": "Actinomycetota bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCA_005776455.1", "bioproject": "PRJNA531348", "biosample": "SAMN11368813", "wgs_master": "SXPE00000000.1", "refseq_category": "na", "taxid": "2900548", "species_taxid": "2900548", "organism_name": "Actinomycetota bacterium", "infraspecific_name": "", "isolate": "F1-120-MAGs244", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/05/24", "asm_name": "ASM577645v1", "submitter": "Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/776/455/GCA_005776455.1_ASM577645v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-05-24", "dateModified": "2019-05-24", "datePublished": "2019-05-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinomycetia bacterium" ], "sample_taxid": [ "1883427" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Fuxian Lake, Yuxi" ], "sample_host_location_id": [], "data_size": "0.594 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 254.0, "max": 254.0 }, "completeness": 22.22, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2241644", "Number of Sequences": "430", "Longest Sequences (bp)": "27031", "N50 (bp)": "5546", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.8", "Number of CDSs": "1882", "Average Protein Length": "294.8", "Coding Ratio (%)": "74.2", "Number of rRNAs": "0", "Number of tRNAs": "21", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aeromicrobium erythreum", "strain": "strain=AR18", "accession": "GCA_001509405.1", "taxid": 2041, "species_taxid": 2041, "relation_to_type": "type", "validated": true, "ani": 94.5424, "matched_fragments": 502, "total_fragments": 541, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromicrobium stalagmiti", "strain": "strain=YC3-14", "accession": "GCA_013283745.1", "taxid": 2738988, "species_taxid": 2738988, "relation_to_type": "type", "validated": true, "ani": 78.6355, "matched_fragments": 280, "total_fragments": 541, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromicrobium massiliense", "strain": "strain=JC14", "accession": "GCA_000312105.1", "taxid": 1464554, "species_taxid": 1464554, "relation_to_type": "type", "validated": true, "ani": 78.4894, "matched_fragments": 268, "total_fragments": 541, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromicrobium tamlense", "strain": "strain=DSM 19087", "accession": "GCA_013408555.1", "taxid": 375541, "species_taxid": 375541, "relation_to_type": "type", "validated": true, "ani": 78.3017, "matched_fragments": 245, "total_fragments": 541, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromicrobium ginsengisoli", "strain": "strain=JCM 14732", "accession": "GCA_004134905.2", "taxid": 363867, "species_taxid": 363867, "relation_to_type": "type", "validated": true, "ani": 78.2517, "matched_fragments": 239, "total_fragments": 541, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromicrobium tamlense", "strain": "strain=SSW1-57", "accession": "GCA_014672995.1", "taxid": 375541, "species_taxid": 375541, "relation_to_type": "type", "validated": true, "ani": 78.1646, "matched_fragments": 259, "total_fragments": 541, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromicrobium phoceense", "strain": "strain=Marseille-Q0843", "accession": "GCA_013868155.1", "taxid": 2754045, "species_taxid": 2754045, "relation_to_type": "type", "validated": true, "ani": 77.8543, "matched_fragments": 230, "total_fragments": 541, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromicrobium choanae", "strain": "strain=9H-4", "accession": "GCA_900167475.1", "taxid": 1736691, "species_taxid": 1736691, "relation_to_type": "type", "validated": true, "ani": 77.7617, "matched_fragments": 229, "total_fragments": 541, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromicrobium phragmitis", "strain": "strain=9W16Y-2", "accession": "GCA_003674095.1", "taxid": 2478914, "species_taxid": 2478914, "relation_to_type": "type", "validated": true, "ani": 77.4829, "matched_fragments": 181, "total_fragments": 541, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromicrobium piscarium", "strain": "strain=Co35", "accession": "GCA_007421815.1", "taxid": 2590901, "species_taxid": 2590901, "relation_to_type": "type", "validated": true, "ani": 77.195, "matched_fragments": 164, "total_fragments": 541, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides flavescens", "strain": "strain=YIM 123512", "accession": "GCA_009823805.1", "taxid": 2691959, "species_taxid": 2691959, "relation_to_type": "type", "validated": true, "ani": 76.5182, "matched_fragments": 214, "total_fragments": 541, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides hwasunensis", "strain": "strain=19197", "accession": "GCA_014779665.1", "taxid": 397258, 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