{
    "type": "genome",
    "identifier": "GCA_005804765.1",
    "organism": "Methylococcaceae bacterium",
    "title": "Methylococcaceae bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_005804765.1",
        "bioproject": "PRJNA531348",
        "biosample": "SAMN11369491",
        "wgs_master": "SYMY00000000.1",
        "refseq_category": "na",
        "taxid": "1933926",
        "species_taxid": "1933926",
        "organism_name": "Methylococcaceae bacterium",
        "infraspecific_name": "",
        "isolate": "F1-80-MAGs108",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/05/24",
        "asm_name": "ASM580476v1",
        "submitter": "Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/804/765/GCA_005804765.1_ASM580476v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-05-24",
    "dateModified": "2019-05-24",
    "datePublished": "2019-05-24",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Methylococcaceae bacterium"
        ],
        "sample_taxid": [
            "1933926"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Fuxian Lake, Yuxi"
        ],
        "sample_host_location_id": [],
        "data_size": "0.530 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": 932.0,
            "max": 932.0
        },
        "completeness": 33.33,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1843403",
        "Number of Sequences": "230",
        "Longest Sequences (bp)": "32210",
        "N50 (bp)": "9733",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "56.7",
        "Number of CDSs": "1654",
        "Average Protein Length": "287.4",
        "Coding Ratio (%)": "77.3",
        "Number of rRNAs": "0",
        "Number of tRNAs": "6",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 33.33,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_005792805.1",
                "gtdb_species": "s__UBA6136 sp005792805",
                "ani": 99.4723,
                "matched_fragments": 414,
                "total_fragments": 504,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylococcaceae;g__UBA6136",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.47",
                "min_intra_species_ani": "99.47",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCA_002423305.1",
                "gtdb_species": "s__UBA6136 sp002423305",
                "ani": 79.1832,
                "matched_fragments": 223,
                "total_fragments": 504,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylococcaceae;g__UBA6136",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.032,
        "cell_length": 0.184,
        "doubling_h": 1.929,
        "growth_tmp": 26.938,
        "optimum_tmp": 29.642,
        "optimum_ph": 7.321,
        "genome_size": 4860515.519,
        "gc_content": 53.393,
        "coding_genes": 4340.777,
        "rRNA16S_genes": 2.4,
        "tRNA_genes": 49.75,
        "gram_stain": 0.0,
        "sporulation": 0.066,
        "motility": 0.625,
        "range_salinity": 0.0,
        "facultative_respiration": 0.142,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.857,
        "mesophilic_range_tmp": 0.75,
        "thermophilic_range_tmp": 0.25,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.687,
        "coccus_cell_shape": 0.25,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.062,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Methylococcales",
        "f__Methylococcaceae",
        "g__UBA6136",
        "s__UBA6136 sp005792805"
    ],
    "_genome_taxon": [
        "Methylococcaceae",
        "bacterium",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Methylococcales",
        "f__Methylococcaceae",
        "g__UBA6136",
        "s__UBA6136 sp005792805",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Methylococcales",
        "Methylococcaceae",
        "UBA6136",
        "UBA6136",
        "sp005792805"
    ],
    "_meo": [
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}