{
    "type": "genome",
    "identifier": "GCA_005808565.1",
    "organism": "Planctomycetaceae bacterium",
    "title": "Planctomycetaceae bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_005808565.1",
        "bioproject": "PRJNA531348",
        "biosample": "SAMN11369453",
        "wgs_master": "SYLP00000000.1",
        "refseq_category": "na",
        "taxid": "2026779",
        "species_taxid": "2026779",
        "organism_name": "Planctomycetaceae bacterium",
        "infraspecific_name": "",
        "isolate": "F1-80-MAGs070",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/05/24",
        "asm_name": "ASM580856v1",
        "submitter": "Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/808/565/GCA_005808565.1_ASM580856v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-05-24",
    "dateModified": "2019-05-24",
    "datePublished": "2019-05-24",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Planctomycetaceae bacterium"
        ],
        "sample_taxid": [
            "2026779"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Fuxian Lake, Yuxi"
        ],
        "sample_host_location_id": [],
        "data_size": "0.547 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": 894.0,
            "max": 894.0
        },
        "completeness": 48.86,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1987803",
        "Number of Sequences": "393",
        "Longest Sequences (bp)": "23121",
        "N50 (bp)": "5331",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "68.9",
        "Number of CDSs": "1331",
        "Average Protein Length": "320.2",
        "Coding Ratio (%)": "64.3",
        "Number of rRNAs": "1",
        "Number of tRNAs": "23",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Botrimarina colliarenosi",
                "strain": "strain=Pla108",
                "accession": "GCA_007859955.1",
                "taxid": 2528001,
                "species_taxid": 2528001,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.8365,
                "matched_fragments": 53,
                "total_fragments": 462,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Posidoniimonas polymericola",
                "strain": "strain=Pla123a",
                "accession": "GCA_007859935.1",
                "taxid": 2528002,
                "species_taxid": 2528002,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.6113,
                "matched_fragments": 59,
                "total_fragments": 462,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 48.86,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_005789975.1",
                "gtdb_species": "s__QWPN01 sp005789975",
                "ani": 99.4393,
                "matched_fragments": 390,
                "total_fragments": 462,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__UBA1268;g__QWPN01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.49",
                "min_intra_species_ani": "99.44",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCA_903831155.1",
                "gtdb_species": "s__QWPN01 sp903831155",
                "ani": 80.5105,
                "matched_fragments": 288,
                "total_fragments": 462,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__UBA1268;g__QWPN01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016872925.1",
                "gtdb_species": "s__QWPN01 sp016872925",
                "ani": 80.3114,
                "matched_fragments": 286,
                "total_fragments": 462,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__UBA1268;g__QWPN01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018970605.1",
                "gtdb_species": "s__QWPN01 sp018970605",
                "ani": 80.2168,
                "matched_fragments": 254,
                "total_fragments": 462,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__UBA1268;g__QWPN01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003670825.1",
                "gtdb_species": "s__QWPN01 sp003670825",
                "ani": 79.9005,
                "matched_fragments": 195,
                "total_fragments": 462,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__UBA1268;g__QWPN01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903958265.1",
                "gtdb_species": "s__QWPN01 sp903958265",
                "ani": 79.7788,
                "matched_fragments": 252,
                "total_fragments": 462,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__UBA1268;g__QWPN01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.26",
                "min_intra_species_ani": "98.26",
                "mean_intra_species_af": "0.80",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_003669255.1",
                "gtdb_species": "s__QWPN01 sp003669255",
                "ani": 79.7417,
                "matched_fragments": 189,
                "total_fragments": 462,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__UBA1268;g__QWPN01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_014192425.1",
                "gtdb_species": "s__QWPN01 sp014192425",
                "ani": 78.9622,
                "matched_fragments": 262,
                "total_fragments": 462,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__UBA1268;g__QWPN01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903919035.1",
                "gtdb_species": "s__QWPN01 sp903919035",
                "ani": 78.9276,
                "matched_fragments": 223,
                "total_fragments": 462,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__UBA1268;g__QWPN01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.57",
                "min_intra_species_ani": "99.56",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 5,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.007,
        "cell_length": 0.054,
        "doubling_h": 1.056,
        "growth_tmp": 27.45,
        "optimum_tmp": 27.449,
        "optimum_ph": 6.766,
        "genome_size": 6959115.728,
        "gc_content": 55.598,
        "coding_genes": 5253.416,
        "rRNA16S_genes": 1.571,
        "tRNA_genes": 54.166,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": 1.0,
        "facultative_respiration": 0.083,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.916,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.666,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.333,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Planctomycetota",
        "c__Planctomycetia",
        "o__Pirellulales",
        "f__UBA1268",
        "g__QWPN01",
        "s__QWPN01 sp005789975"
    ],
    "_genome_taxon": [
        "Planctomycetaceae",
        "bacterium",
        "d__Bacteria",
        "p__Planctomycetota",
        "c__Planctomycetia",
        "o__Pirellulales",
        "f__UBA1268",
        "g__QWPN01",
        "s__QWPN01 sp005789975",
        "Bacteria",
        "Planctomycetota",
        "Planctomycetia",
        "Pirellulales",
        "UBA1268",
        "QWPN01",
        "QWPN01",
        "sp005789975"
    ],
    "_meo": [
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}