{
    "type": "genome",
    "identifier": "GCA_005809105.1",
    "organism": "Verrucomicrobiales bacterium",
    "title": "Verrucomicrobiales bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_005809105.1",
        "bioproject": "PRJNA531348",
        "biosample": "SAMN11369443",
        "wgs_master": "SYLI00000000.1",
        "refseq_category": "na",
        "taxid": "2026801",
        "species_taxid": "2026801",
        "organism_name": "Verrucomicrobiales bacterium",
        "infraspecific_name": "",
        "isolate": "F1-80-MAGs060",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/05/24",
        "asm_name": "ASM580910v1",
        "submitter": "Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/809/105/GCA_005809105.1_ASM580910v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-05-24",
    "dateModified": "2019-05-24",
    "datePublished": "2019-05-24",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Verrucomicrobiales bacterium"
        ],
        "sample_taxid": [
            "2026801"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Fuxian Lake, Yuxi"
        ],
        "sample_host_location_id": [],
        "data_size": "0.839 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": 884.0,
            "max": 884.0
        },
        "completeness": 96.76,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2992473",
        "Number of Sequences": "106",
        "Longest Sequences (bp)": "170322",
        "N50 (bp)": "39219",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "64.4",
        "Number of CDSs": "2426",
        "Average Protein Length": "370.3",
        "Coding Ratio (%)": "90.0",
        "Number of rRNAs": "0",
        "Number of tRNAs": "40",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Corallococcus exercitus",
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                "accession": "GCA_003611585.1",
                "taxid": 2316736,
                "species_taxid": 2316736,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 53,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corallococcus exiguus",
                "strain": "strain=DSM 14696",
                "accession": "GCA_009909105.1",
                "taxid": 83462,
                "species_taxid": 83462,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 52,
                "total_fragments": 942,
                "ani_threshold": 95,
                "status": "below_threshold"
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        ],
        "cc_result": {
            "completeness": 96.76,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
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                "accession": "GCA_005809105.1",
                "gtdb_species": "s__SYLI01 sp005809105",
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                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Pedosphaerales;f__UBA1100;g__SYLI01",
                "ani_circumscription_radius": 95.0,
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                "status": "conclusive"
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                "mean_intra_species_af": "0.91",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
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                "accession": "GCA_005791875.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Pedosphaerales;f__SXTU01;g__SXTU01",
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                "mean_intra_species_ani": "99.67",
                "min_intra_species_ani": "99.31",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 5,
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            },
            {
                "accession": "GCA_009773355.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Pedosphaerales;f__SXTU01;g__SXTU01",
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                "mean_intra_species_ani": "99.99",
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                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_903863315.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Pedosphaerales;f__SXTU01;g__SXTU01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
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            },
            {
                "accession": "GCA_016871675.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Pedosphaerales;f__VHCN01;g__VHCN01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCA_016199935.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Pedosphaerales;f__JACQFS01;g__JACQFS01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003134375.1",
                "gtdb_species": "s__UBA7542 sp003134375",
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                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Pedosphaerales;f__UBA11358;g__UBA7542",
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            },
            {
                "accession": "GCA_009695195.1",
                "gtdb_species": "s__SCTL01 sp009695195",
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            },
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                "accession": "GCA_002721895.1",
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            },
            {
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            },
            {
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            {
                "accession": "GCA_016219875.1",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.172,
        "cell_length": 0.119,
        "doubling_h": null,
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        "rRNA16S_genes": 3.0,
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        "bacillus_cell_shape": 0.875,
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    "_gtdb_taxon": [
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        "f__UBA1100",
        "g__SYLI01",
        "s__SYLI01 sp005809105"
    ],
    "_genome_taxon": [
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        "d__Bacteria",
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        "c__Verrucomicrobiae",
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        "g__SYLI01",
        "s__SYLI01 sp005809105",
        "Bacteria",
        "Verrucomicrobiota",
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        "Limisphaerales",
        "UBA1100",
        "SYLI01",
        "SYLI01",
        "sp005809105"
    ],
    "_meo": [
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}