{
    "type": "genome",
    "identifier": "GCA_005879175.1",
    "organism": "Deltaproteobacteria bacterium",
    "title": "Deltaproteobacteria bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Jill Banfield's Lab at Berkeley",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_005879175.1",
        "bioproject": "PRJNA449266",
        "biosample": "SAMN11380571",
        "wgs_master": "VBLF00000000.1",
        "refseq_category": "na",
        "taxid": "2026735",
        "species_taxid": "2026735",
        "organism_name": "Deltaproteobacteria bacterium",
        "infraspecific_name": "",
        "isolate": "DP_28",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/05/28",
        "asm_name": "ASM587917v1",
        "submitter": "Jill Banfield's Lab at Berkeley",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/879/175/GCA_005879175.1_ASM587917v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-05-28",
    "dateModified": "2019-05-28",
    "datePublished": "2019-05-28",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Deltaproteobacteria bacterium"
        ],
        "sample_taxid": [
            "2026735"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Angelo Coast Range Reserve, CA"
        ],
        "sample_host_location_id": [],
        "data_size": "1.048 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 79.17,
        "contamination": 4.92,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3827639",
        "Number of Sequences": "637",
        "Longest Sequences (bp)": "37307",
        "N50 (bp)": "7261",
        "Gap Ratio (%)": "0.008543",
        "GCcontent (%)": "70.0",
        "Number of CDSs": "3278",
        "Average Protein Length": "279.0",
        "Coding Ratio (%)": "71.7",
        "Number of rRNAs": "1",
        "Number of tRNAs": "36",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Elioraea thermophila",
                "strain": "strain=YIM 72297",
                "accession": "GCA_003336755.1",
                "taxid": 2185104,
                "species_taxid": 2185104,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.2841,
                "matched_fragments": 58,
                "total_fragments": 950,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chelatococcus composti",
                "strain": "strain=DSM 101465",
                "accession": "GCA_014201415.1",
                "taxid": 1743235,
                "species_taxid": 1743235,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.1049,
                "matched_fragments": 58,
                "total_fragments": 950,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chelatococcus composti",
                "strain": "strain=DSM 101465",
                "accession": "GCA_018398355.1",
                "taxid": 1743235,
                "species_taxid": 1743235,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.0936,
                "matched_fragments": 59,
                "total_fragments": 950,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chelatococcus composti",
                "strain": "strain=CGMCC 1.15283",
                "accession": "GCA_014641535.1",
                "taxid": 1743235,
                "species_taxid": 1743235,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.0936,
                "matched_fragments": 59,
                "total_fragments": 950,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corallococcus silvisoli",
                "strain": "strain=c25j21",
                "accession": "GCA_009909145.1",
                "taxid": 2697031,
                "species_taxid": 2697031,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.0379,
                "matched_fragments": 76,
                "total_fragments": 950,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Azohydromonas caseinilytica",
                "strain": "strain=G-1-1-14",
                "accession": "GCA_012927045.1",
                "taxid": 2728836,
                "species_taxid": 2728836,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.0253,
                "matched_fragments": 67,
                "total_fragments": 950,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chelatococcus caeni",
                "strain": "strain=DSM 103737",
                "accession": "GCA_014196925.1",
                "taxid": 1348468,
                "species_taxid": 1348468,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9845,
                "matched_fragments": 80,
                "total_fragments": 950,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pyxidicoccus trucidator",
                "strain": "strain=CA060A",
                "accession": "GCA_010894435.1",
                "taxid": 2709662,
                "species_taxid": 2709662,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9406,
                "matched_fragments": 112,
                "total_fragments": 950,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Stigmatella erecta",
                "strain": "strain=DSM 16858",
                "accession": "GCA_900111745.1",
                "taxid": 83460,
                "species_taxid": 83460,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9307,
                "matched_fragments": 82,
                "total_fragments": 950,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Stigmatella aurantiaca",
                "strain": "strain=DSM 17044",
                "accession": "GCA_900109545.1",
                "taxid": 41,
                "species_taxid": 41,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.8969,
                "matched_fragments": 75,
                "total_fragments": 950,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gemmatirosa kalamazoonensis",
                "strain": "strain=KBS708",
                "accession": "GCA_000522985.1",
                "taxid": 861299,
                "species_taxid": 861299,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.7308,
                "matched_fragments": 175,
                "total_fragments": 950,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Burkholderia cenocepacia",
                "strain": "strain=NCTC13227",
                "accession": "GCA_900446215.1",
                "taxid": 95486,
                "species_taxid": 95486,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.7088,
                "matched_fragments": 102,
                "total_fragments": 950,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraconexibacter algicola",
                "strain": "strain=Seoho-28",
                "accession": "GCA_003044185.1",
                "taxid": 2133960,
                "species_taxid": 2133960,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.694,
                "matched_fragments": 143,
                "total_fragments": 950,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Burkholderia latens",
                "strain": "",
                "accession": "GCA_902499045.1",
                "taxid": 488446,
                "species_taxid": 488446,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 74.6256,
                "matched_fragments": 106,
                "total_fragments": 950,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Burkholderia latens",
                "strain": "strain=CCUG 54555",
                "accession": "GCA_008802135.1",
                "taxid": 488446,
                "species_taxid": 488446,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 74.6255,
                "matched_fragments": 104,
                "total_fragments": 950,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 79.17,
            "contamination": 4.92,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_005879245.1",
                "gtdb_species": "s__DP-23 sp005879245",
                "ani": 97.0245,
                "matched_fragments": 572,
                "total_fragments": 950,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_B;c__Binatia;o__UTPRO1;f__DP-6;g__DP-23",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.46",
                "min_intra_species_ani": "97.46",
                "mean_intra_species_af": "0.74",
                "min_intra_species_af": "0.74",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCA_005879795.1",
                "gtdb_species": "s__DP-6 sp005879795",
                "ani": 79.8301,
                "matched_fragments": 457,
                "total_fragments": 950,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_B;c__Binatia;o__UTPRO1;f__DP-6;g__DP-6",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_005888095.1",
                "gtdb_species": "s__DP-3 sp005888095",
                "ani": 79.752,
                "matched_fragments": 520,
                "total_fragments": 950,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_B;c__Binatia;o__UTPRO1;f__DP-6;g__DP-3",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.46",
                "min_intra_species_ani": "98.46",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_005879585.1",
                "gtdb_species": "s__DP-3 sp005879585",
                "ani": 79.0104,
                "matched_fragments": 430,
                "total_fragments": 950,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_B;c__Binatia;o__UTPRO1;f__DP-6;g__DP-3",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_005879205.1",
                "gtdb_species": "s__DP-3 sp005879205",
                "ani": 78.7224,
                "matched_fragments": 351,
                "total_fragments": 950,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_B;c__Binatia;o__UTPRO1;f__DP-6;g__DP-3",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016178705.1",
                "gtdb_species": "s__JACOST01 sp016178705",
                "ani": 76.2609,
                "matched_fragments": 108,
                "total_fragments": 950,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_B;c__Binatia;o__HRBIN30;f__JACQVA1;g__JACOST01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_016874795.1",
                "gtdb_species": "s__VGTG01 sp016874795",
                "ani": 76.2018,
                "matched_fragments": 190,
                "total_fragments": 950,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_B;c__Binatia;o__UBA12015;f__UBA12015;g__VGTG01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_011390455.1",
                "gtdb_species": "s__JAABTL01 sp011390455",
                "ani": 74.7649,
                "matched_fragments": 81,
                "total_fragments": 950,
                "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Trueperaceae;g__JAABTL01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_005777185.1",
                "gtdb_species": "s__SXNL01 sp005777185",
                "ani": 74.6563,
                "matched_fragments": 96,
                "total_fragments": 950,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Polyangia;o__Polyangiales;f__Polyangiaceae;g__SXNL01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.91",
                "min_intra_species_ani": "99.91",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Desulfobacterota_B",
        "c__Binatia",
        "o__DP-6",
        "f__DP-6",
        "g__DP-23",
        "s__DP-23 sp005879245"
    ],
    "_genome_taxon": [
        "Deltaproteobacteria",
        "bacterium",
        "d__Bacteria",
        "p__Desulfobacterota_B",
        "c__Binatia",
        "o__DP-6",
        "f__DP-6",
        "g__DP-23",
        "s__DP-23 sp005879245",
        "Bacteria",
        "Desulfobacterota",
        "B",
        "Binatia",
        "DP-6",
        "DP-6",
        "DP-23",
        "DP-23",
        "sp005879245"
    ],
    "_meo": [
        {
            "id": "MEO_0000007",
            "label": "soil"
        },
        {
            "id": "MEO_0001926",
            "label": "savanna soil"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}