{
    "type": "genome",
    "identifier": "GCA_005883465.1",
    "organism": "Actinomycetota bacterium",
    "title": "Actinomycetota bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Jill Banfield's Lab at Berkeley",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_005883465.1",
        "bioproject": "PRJNA449266",
        "biosample": "SAMN11380236",
        "wgs_master": "VAYI00000000.1",
        "refseq_category": "na",
        "taxid": "2900548",
        "species_taxid": "2900548",
        "organism_name": "Actinomycetota bacterium",
        "infraspecific_name": "",
        "isolate": "AC_54",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/05/29",
        "asm_name": "ASM588346v1",
        "submitter": "Jill Banfield's Lab at Berkeley",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/005/883/465/GCA_005883465.1_ASM588346v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-05-29",
    "dateModified": "2019-05-29",
    "datePublished": "2019-05-29",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Actinomycetia bacterium"
        ],
        "sample_taxid": [
            "1883427"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Angelo Coast Range Reserve, CA"
        ],
        "sample_host_location_id": [],
        "data_size": "0.593 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 87.79,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2160720",
        "Number of Sequences": "325",
        "Longest Sequences (bp)": "21463",
        "N50 (bp)": "8237",
        "Gap Ratio (%)": "0.949128",
        "GCcontent (%)": "66.5",
        "Number of CDSs": "1988",
        "Average Protein Length": "268.1",
        "Coding Ratio (%)": "74.0",
        "Number of rRNAs": "3",
        "Number of tRNAs": "47",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Thermopolyspora flexuosa",
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                "accession": "GCA_006716785.1",
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                "species_taxid": 103836,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 50,
                "total_fragments": 549,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Phycicoccus mangrovi",
                "strain": "strain=KQZ13P-1",
                "accession": "GCA_018729305.1",
                "taxid": 2840470,
                "species_taxid": 2840470,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.4848,
                "matched_fragments": 53,
                "total_fragments": 549,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cellulomonas palmilytica",
                "strain": "strain=EW123",
                "accession": "GCA_021590045.1",
                "taxid": 2608402,
                "species_taxid": 2608402,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.4493,
                "matched_fragments": 76,
                "total_fragments": 549,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microbacterium immunditiarum",
                "strain": "strain=DSM 24662",
                "accession": "GCA_013409785.1",
                "taxid": 337480,
                "species_taxid": 337480,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.3557,
                "matched_fragments": 54,
                "total_fragments": 549,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Agrococcus pavilionensis",
                "strain": "strain=RW1",
                "accession": "GCA_000400485.1",
                "taxid": 1346502,
                "species_taxid": 1346502,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.3384,
                "matched_fragments": 57,
                "total_fragments": 549,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Agrococcus sediminis",
                "strain": "strain=NS18",
                "accession": "GCA_007923295.1",
                "taxid": 2599924,
                "species_taxid": 2599924,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.315,
                "matched_fragments": 59,
                "total_fragments": 549,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thalassobaculum fulvum",
                "strain": "strain=KCTC 42651",
                "accession": "GCA_014652915.1",
                "taxid": 1633335,
                "species_taxid": 1633335,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.2232,
                "matched_fragments": 51,
                "total_fragments": 549,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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                "accession": "GCA_005883175.1",
                "gtdb_species": "s__AC-67 sp005883175",
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                "matched_fragments": 342,
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__UBA4738;o__AC-67;f__AC-67;g__AC-67",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.81",
                "min_intra_species_ani": "95.81",
                "mean_intra_species_af": "0.74",
                "min_intra_species_af": "0.74",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
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                "gtdb_species": "s__AC-67 sp005884515",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016208485.1",
                "gtdb_species": "s__JACQXY01 sp016208485",
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                "matched_fragments": 84,
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__UBA4738;o__AC-67;f__AC-67;g__JACQXY01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_013201035.1",
                "gtdb_species": "s__Phycicoccus sp013201035",
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                "matched_fragments": 59,
                "total_fragments": 549,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Dermatophilaceae;g__Phycicoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_006716785.1",
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                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_016887965.1",
                "gtdb_species": "s__Phycicoccus sp016887965",
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                "matched_fragments": 62,
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Dermatophilaceae;g__Phycicoccus",
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                "mean_intra_species_ani": "N/A",
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                "mean_intra_species_af": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014650075.1",
                "gtdb_species": "s__Streptomyces microflavus",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
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                "mean_intra_species_ani": "98.25",
                "min_intra_species_ani": "97.27",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 13,
                "status": "-"
            },
            {
                "accession": "GCF_006715055.1",
                "gtdb_species": "s__Lapillicoccus jejuensis",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Dermatophilaceae;g__Lapillicoccus",
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_003999975.1",
                "gtdb_species": "s__Actinoplanes sp003999975",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Actinoplanes",
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            },
            {
                "accession": "GCA_017744955.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Dokdonella_A",
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            },
            {
                "accession": "GCA_003220225.1",
                "gtdb_species": "s__AR12 sp003220225",
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                "matched_fragments": 73,
                "total_fragments": 549,
                "gtdb_taxonomy": "d__Bacteria;p__Methylomirabilota;c__Methylomirabilia;o__Rokubacteriales;f__CSP1-6;g__AR12",
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            },
            {
                "accession": "GCA_004143945.1",
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                "matched_fragments": 50,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Rhodanobacteraceae;g__Dokdonella_A",
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
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        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
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        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Actinomycetota",
        "c__UBA4738",
        "o__AC-67",
        "f__AC-67",
        "g__AC-67",
        "s__AC-67 sp005883175"
    ],
    "_genome_taxon": [
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        "bacterium",
        "d__Bacteria",
        "p__Actinomycetota",
        "c__UBA4738",
        "o__AC-67",
        "f__AC-67",
        "g__AC-67",
        "s__AC-67 sp005883175",
        "Bacteria",
        "Actinomycetota",
        "UBA4738",
        "AC-67",
        "AC-67",
        "AC-67",
        "AC-67",
        "sp005883175"
    ],
    "_meo": [
        {
            "id": "MEO_0000007",
            "label": "soil"
        },
        {
            "id": "MEO_0001926",
            "label": "savanna soil"
        }
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}