{ "type": "genome", "identifier": "GCA_007130045.1", "organism": "Opitutales bacterium", "title": "Opitutales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam", "publication": [ {} ], "properties": { "assembly_accession": "GCA_007130045.1", "bioproject": "PRJNA453733", "biosample": "SAMN10610685", "wgs_master": "SLTG00000000.1", "refseq_category": "na", "taxid": "2026772", "species_taxid": "2026772", "organism_name": "Opitutales bacterium", "infraspecific_name": "", "isolate": "CSSed165cm_93", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/07/18", "asm_name": "ASM713004v1", "submitter": "Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/130/045/GCA_007130045.1_ASM713004v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-07-18", "dateModified": "2019-07-18", "datePublished": "2019-07-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Opitutales bacterium" ], "sample_taxid": [ "2026772" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Russia: Kulunda Steppe" ], "sample_host_location_id": [], "data_size": "0.971 MB", "sample_ph_range": { "min": 99.0, "max": 99.0 }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3405831", "Number of Sequences": "146", "Longest Sequences (bp)": "127898", "N50 (bp)": "40989", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "58.5", "Number of CDSs": "2912", "Average Protein Length": "325.3", "Coding Ratio (%)": "83.4", "Number of rRNAs": "0", "Number of tRNAs": "48", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_007130045.1", "gtdb_species": "s__PXDC01 sp007130045", "ani": 100.0, "matched_fragments": 1058, "total_fragments": 1063, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__T3Sed10-336;g__PXDC01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.86", "min_intra_species_ani": "99.79", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.93", "num_clustered_genomes": 4, "status": "conclusive" }, { 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1063, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__REEB01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.248, "cell_length": -0.398, "doubling_h": null, "growth_tmp": 36.5, "optimum_tmp": null, "optimum_ph": 7.75, "genome_size": 5272321.702, "gc_content": 65.092, "coding_genes": 4656.944, "rRNA16S_genes": 1.0, "tRNA_genes": 51.333, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.5, "anaerobic_respiration": 0.25, "aerobic_respiration": 0.25, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 1.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Verrucomicrobiota", "c__Verrucomicrobiae", "o__Opitutales", "f__T3Sed10-336", "g__PXDC01", "s__PXDC01 sp007130045" ], "_genome_taxon": [ "Opitutales", "bacterium", "d__Bacteria", "p__Verrucomicrobiota", "c__Verrucomicrobiae", "o__Opitutales", "f__T3Sed10-336", "g__PXDC01", "s__PXDC01 sp007130045", "Bacteria", "Verrucomicrobiota", "Verrucomicrobiae", "Opitutales", "T3Sed10-336", "PXDC01", "PXDC01", "sp007130045" ], "_meo": [ { "id": "MEO_0000189", "label": "saline lake sediment" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }