{
    "type": "genome",
    "identifier": "GCA_007131465.1",
    "organism": "Paracoccaceae bacterium",
    "title": "Paracoccaceae bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_007131465.1",
        "bioproject": "PRJNA453733",
        "biosample": "SAMN10610614",
        "wgs_master": "SLQN00000000.1",
        "refseq_category": "na",
        "taxid": "1904441",
        "species_taxid": "1904441",
        "organism_name": "Paracoccaceae bacterium",
        "infraspecific_name": "",
        "isolate": "CSSed165cm_532",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/07/18",
        "asm_name": "ASM713146v1",
        "submitter": "Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/131/465/GCA_007131465.1_ASM713146v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-07-18",
    "dateModified": "2019-07-18",
    "datePublished": "2019-07-18",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Paracoccaceae bacterium"
        ],
        "sample_taxid": [
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        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Russia: Kulunda Steppe"
        ],
        "sample_host_location_id": [],
        "data_size": "0.853 MB",
        "sample_ph_range": {
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            "max": 99.0
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
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        "contamination": 4.17,
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        "genome_count": 1
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    "data_type": "MAG",
    "data_source": "INSDC",
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        "Number of Sequences": "581",
        "Longest Sequences (bp)": "23582",
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        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "62.7",
        "Number of CDSs": "2397",
        "Average Protein Length": "286.0",
        "Coding Ratio (%)": "67.9",
        "Number of rRNAs": "0",
        "Number of tRNAs": "29",
        "Number of CRISPRs": "0"
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    "has_analysis": true,
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    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}