{ "type": "genome", "identifier": "GCA_007693585.1", "organism": "Deltaproteobacteria bacterium", "title": "Deltaproteobacteria bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of Calgary", "publication": [ {} ], "properties": { "assembly_accession": "GCA_007693585.1", "bioproject": "PRJNA377096", "biosample": "SAMN10237401", "wgs_master": "REDH00000000.1", "refseq_category": "na", "taxid": "2026735", "species_taxid": "2026735", "organism_name": "Deltaproteobacteria bacterium", "infraspecific_name": "", "isolate": "GEM2.Bin10", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/07/30", "asm_name": "ASM769358v1", "submitter": "University of Calgary", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/693/585/GCA_007693585.1_ASM769358v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-07-30", "dateModified": "2019-07-30", "datePublished": "2019-07-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Deltaproteobacteria bacterium" ], "sample_taxid": [ "2026735" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada: Cariboo Plateau" ], "sample_host_location_id": [], "data_size": "1.356 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4971832", "Number of Sequences": "223", "Longest Sequences (bp)": "181782", "N50 (bp)": "41319", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.7", "Number of CDSs": "3428", "Average Protein Length": "407.9", "Coding Ratio (%)": "84.4", "Number of rRNAs": "1", "Number of tRNAs": "51", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Lujinxingia vulgaris", "strain": "strain=TMQ4", "accession": "GCA_007997015.1", "taxid": 2600176, "species_taxid": 2600176, "relation_to_type": "type", "validated": true, "ani": 75.6506, "matched_fragments": 68, "total_fragments": 1554, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lujinxingia sediminis", "strain": "strain=SEH01", "accession": "GCA_004005565.1", "taxid": 2480984, "species_taxid": 2480984, "relation_to_type": "type", "validated": true, "ani": 75.3899, "matched_fragments": 55, "total_fragments": 1554, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lujinxingia litoralis", "strain": "strain=B210", "accession": "GCA_003260125.1", "taxid": 2211119, "species_taxid": 2211119, "relation_to_type": "type", "validated": true, "ani": 75.1975, "matched_fragments": 57, "total_fragments": 1554, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium hawassense", "strain": "strain=AC99b", "accession": "GCA_003289945.1", "taxid": 1209954, "species_taxid": 1209954, "relation_to_type": "type", "validated": true, "ani": 75.0552, "matched_fragments": 55, "total_fragments": 1554, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arhodomonas aquaeolei", "strain": "strain=DSM 8974", "accession": "GCA_000374645.1", "taxid": 2369, "species_taxid": 2369, "relation_to_type": "type", "validated": true, "ani": 75.0528, "matched_fragments": 60, "total_fragments": 1554, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus terminator", "strain": "strain=CA054A", "accession": "GCA_003611635.1", "taxid": 2316733, "species_taxid": 2316733, "relation_to_type": "type", "validated": true, "ani": 74.9948, "matched_fragments": 119, "total_fragments": 1554, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Myxococcus eversor", "strain": "strain=AB053B", "accession": "GCA_010894455.1", "taxid": 2709661, "species_taxid": 2709661, "relation_to_type": "type", "validated": true, "ani": 74.9897, "matched_fragments": 122, "total_fragments": 1554, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium atlanticum", "strain": "strain=CNPSo 3140", "accession": "GCA_003289965.1", "taxid": 2233532, "species_taxid": 2233532, "relation_to_type": "type", "validated": true, "ani": 74.9565, "matched_fragments": 54, "total_fragments": 1554, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Plasticicumulans lactativorans", "strain": "strain=DSM 25287", "accession": "GCA_004341245.1", "taxid": 1133106, "species_taxid": 1133106, "relation_to_type": "type", "validated": true, "ani": 74.907, "matched_fragments": 98, "total_fragments": 1554, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Myxococcus llanfairpwllgwyngyllgogerychwyrndrobwllllantysiliogogogochensis", "strain": "strain=AM401", "accession": "GCA_006636215.1", "taxid": 2590453, "species_taxid": 2590453, "relation_to_type": "type", "validated": true, "ani": 74.8815, "matched_fragments": 118, "total_fragments": 1554, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xylophilus rhododendri", "strain": "strain=KACC 21265", "accession": "GCA_009906855.1", "taxid": 2697032, "species_taxid": 2697032, "relation_to_type": "type", "validated": true, "ani": 74.8489, "matched_fragments": 78, "total_fragments": 1554, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides plantarum", "strain": "strain=DSM 11054", "accession": "GCA_006346395.1", "taxid": 29299, "species_taxid": 29299, "relation_to_type": "type", "validated": true, "ani": 74.7995, "matched_fragments": 96, "total_fragments": 1554, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tessaracoccus flavescens", "strain": "strain=SST-39T", "accession": "GCA_001998865.1", "taxid": 399497, "species_taxid": 399497, "relation_to_type": "type", "validated": true, "ani": 74.7786, "matched_fragments": 53, "total_fragments": 1554, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenimonas metalli", "strain": "strain=CF5-1", "accession": "GCA_000747155.1", "taxid": 948077, "species_taxid": 948077, "relation_to_type": "type", "validated": true, "ani": 74.7762, "matched_fragments": 72, "total_fragments": 1554, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Longimicrobium terrae", "strain": "strain=CECT 8660", "accession": "GCA_014198875.1", "taxid": 1639882, "species_taxid": 1639882, "relation_to_type": "type", "validated": true, "ani": 74.7758, "matched_fragments": 95, "total_fragments": 1554, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Longimicrobium terrae", "strain": "strain=DSM 29007", "accession": "GCA_014202995.1", "taxid": 1639882, "species_taxid": 1639882, "relation_to_type": "type", "validated": true, "ani": 74.7715, "matched_fragments": 96, "total_fragments": 1554, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Longispora albida", "strain": "strain=DSM 44784", "accession": "GCA_000379825.1", "taxid": 203523, "species_taxid": 203523, "relation_to_type": "type", "validated": true, "ani": 74.7656, "matched_fragments": 99, "total_fragments": 1554, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Longimicrobium terrae", "strain": "strain=CB-286315", "accession": "GCA_013000925.1", "taxid": 1639882, "species_taxid": 1639882, "relation_to_type": "type", "validated": true, "ani": 74.7643, "matched_fragments": 98, "total_fragments": 1554, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces atrinae", "strain": "strain=DSM 23870", "accession": "GCA_013407835.1", "taxid": 592376, "species_taxid": 592376, "relation_to_type": "type", "validated": true, "ani": 74.749, "matched_fragments": 62, "total_fragments": 1554, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Catellatospora tritici", "strain": "strain=NEAU-YM18", "accession": "GCA_019083965.1", "taxid": 2851566, "species_taxid": 2851566, "relation_to_type": "type", "validated": true, "ani": 74.7022, "matched_fragments": 128, "total_fragments": 1554, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aromatoleum tolulyticum", "strain": "strain=ATCC 51758", "accession": "GCA_900156155.1", "taxid": 34027, "species_taxid": 34027, "relation_to_type": "type", "validated": true, "ani": 74.6974, "matched_fragments": 54, "total_fragments": 1554, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aromatoleum petrolei", "strain": "strain=ToN1", "accession": "GCA_012910985.1", "taxid": 76116, "species_taxid": 76116, "relation_to_type": "type", "validated": true, "ani": 74.658, "matched_fragments": 56, "total_fragments": 1554, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aromatoleum petrolei", "strain": "strain=ToN1", "accession": "GCA_017894385.1", "taxid": 76116, "species_taxid": 76116, "relation_to_type": "type", "validated": true, "ani": 74.6545, "matched_fragments": 58, "total_fragments": 1554, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes digitatis", "strain": "strain=DSM 43149", "accession": "GCA_014205335.1", "taxid": 1868, "species_taxid": 1868, "relation_to_type": "type", "validated": true, "ani": 74.6377, "matched_fragments": 150, "total_fragments": 1554, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Plantibacter flavus", "strain": "strain=VKM Ac-2504", 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"species_taxid": 32002, "relation_to_type": "type", "validated": true, "ani": 74.5299, "matched_fragments": 70, "total_fragments": 1554, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter denitrificans", "strain": "strain=NBRC 15125", "accession": "GCA_001571365.1", "taxid": 32002, "species_taxid": 32002, "relation_to_type": "type", "validated": true, "ani": 74.5274, "matched_fragments": 71, "total_fragments": 1554, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_007693585.1", "gtdb_species": "s__REDH01 sp007693585", "ani": 100.0, "matched_fragments": 1537, "total_fragments": 1554, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Bradymonadia;o__REDH01;f__REDH01;g__REDH01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", 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