{ "type": "genome", "identifier": "GCA_008015405.1", "organism": "Pseudomonas sp.", "title": "Pseudomonas sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Colorado School of Mines", "publication": [ {} ], "properties": { "assembly_accession": "GCA_008015405.1", "bioproject": "PRJNA428383", "biosample": "SAMN10026464", "wgs_master": "SSFM00000000.1", "refseq_category": "na", "taxid": "306", "species_taxid": "306", "organism_name": "Pseudomonas sp.", "infraspecific_name": "", "isolate": "Bin_52_2", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/08/19", "asm_name": "ASM801540v1", "submitter": "Colorado School of Mines", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/015/405/GCA_008015405.1_ASM801540v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-08-19", "dateModified": "2019-08-19", "datePublished": "2019-08-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas sp." ], "sample_taxid": [ "306" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA:California" ], "sample_host_location_id": [], "data_size": "0.434 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 12.5, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1540019", "Number of Sequences": "141", "Longest Sequences (bp)": "47853", "N50 (bp)": "11651", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.1", "Number of CDSs": "1343", "Average Protein Length": "307.2", "Coding Ratio (%)": "80.4", "Number of rRNAs": "0", "Number of tRNAs": "11", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas alcaligenes", "strain": "strain=NCTC10367", "accession": "GCA_900455475.1", "taxid": 43263, "species_taxid": 43263, "relation_to_type": "type", "validated": true, "ani": 88.3105, "matched_fragments": 263, "total_fragments": 443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas alcaligenes", "strain": "strain=NBRC 14159", "accession": "GCA_000467105.1", "taxid": 43263, "species_taxid": 43263, "relation_to_type": "type", "validated": true, "ani": 88.2425, "matched_fragments": 258, "total_fragments": 443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas campi", "strain": "strain=S1-A32-2", "accession": "GCA_013200955.2", "taxid": 2731681, "species_taxid": 2731681, "relation_to_type": "type", "validated": true, "ani": 83.3082, "matched_fragments": 226, "total_fragments": 443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas hydrolytica", "strain": "strain=DSWY01", "accession": "GCA_021495345.2", "taxid": 2493633, "species_taxid": 2493633, "relation_to_type": "type", "validated": true, "ani": 82.8214, "matched_fragments": 203, "total_fragments": 443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas guguanensis", "strain": "strain=JCM 18416", "accession": "GCA_900104265.1", "taxid": 1198456, "species_taxid": 1198456, "relation_to_type": "type", "validated": true, "ani": 82.5632, "matched_fragments": 210, "total_fragments": 443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas yangonensis", "strain": "strain=MY50", "accession": "GCA_009932725.1", "taxid": 2579922, "species_taxid": 2579922, "relation_to_type": "type", "validated": true, "ani": 82.1371, "matched_fragments": 199, "total_fragments": 443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas oleovorans subsp. oleovorans", "strain": "strain=NBRC 13583", "accession": "GCA_002091815.1", "taxid": 1218129, "species_taxid": 301, "relation_to_type": "type", "validated": true, "ani": 81.8356, "matched_fragments": 200, "total_fragments": 443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas oleovorans subsp. oleovorans", "strain": "strain=DSM 1045", "accession": "GCA_002197815.1", "taxid": 1218129, "species_taxid": 301, "relation_to_type": "type", "validated": true, "ani": 81.797, "matched_fragments": 207, "total_fragments": 443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas furukawaii", "strain": "strain=KF707", "accession": "GCA_002355475.1", "taxid": 1149133, "species_taxid": 1149133, "relation_to_type": "type", "validated": true, "ani": 81.6058, "matched_fragments": 191, "total_fragments": 443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas furukawaii", "strain": "strain=KF707", "accession": "GCA_000262065.3", "taxid": 1149133, "species_taxid": 1149133, "relation_to_type": "type", "validated": true, "ani": 81.4352, "matched_fragments": 196, "total_fragments": 443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas borbori", "strain": "strain=DSM 17834", "accession": "GCA_900115555.1", "taxid": 289003, "species_taxid": 289003, "relation_to_type": "type", "validated": true, "ani": 81.2257, "matched_fragments": 191, "total_fragments": 443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas citronellolis", "strain": "strain=LMG 18378", "accession": "GCA_900112375.1", "taxid": 53408, "species_taxid": 53408, "relation_to_type": "type", "validated": true, "ani": 81.1168, "matched_fragments": 228, "total_fragments": 443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas citronellolis", "strain": "strain=NBRC 103043", "accession": "GCA_002091555.1", "taxid": 53408, "species_taxid": 53408, "relation_to_type": "type", "validated": true, "ani": 81.0844, "matched_fragments": 229, "total_fragments": 443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas nitroreducens", "strain": "strain=NBRC 12694", "accession": "GCA_002091755.1", "taxid": 46680, "species_taxid": 46680, "relation_to_type": "suspected-type", "validated": true, "ani": 80.6904, "matched_fragments": 191, "total_fragments": 443, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas kuykendallii", "strain": "strain=NRRL B-59562", "accession": "GCA_900106975.1", "taxid": 1007099, "species_taxid": 1007099, "relation_to_type": "type", "validated": true, "ani": 80.6345, "matched_fragments": 179, "total_fragments": 443, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 12.5, 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