{ "type": "genome", "identifier": "GCA_008080525.1", "organism": "bacterium", "title": "bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "The Ohio State University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_008080525.1", "bioproject": "PRJNA512237", "biosample": "SAMN11532978", "wgs_master": "VIKF00000000.1", "refseq_category": "na", "taxid": "1869227", "species_taxid": "1869227", "organism_name": "bacterium", "infraspecific_name": "", "isolate": "X1_MetaBAT.24", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/08/23", "asm_name": "ASM808052v1", "submitter": "The Ohio State University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/080/525/GCA_008080525.1_ASM808052v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-08-23", "dateModified": "2019-08-23", "datePublished": "2019-08-23", "_annotation": { "sample_count": 1, "sample_organism": [ "bacterium" ], "sample_taxid": [ "1869227" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Ohio" ], "sample_host_location_id": [], "data_size": "0.798 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2885518", "Number of Sequences": "133", "Longest Sequences (bp)": "124692", "N50 (bp)": "32140", "Gap Ratio (%)": "0.029631", "GCcontent (%)": "66.0", "Number of CDSs": "2848", "Average Protein Length": "292.9", "Coding Ratio (%)": "86.7", "Number of rRNAs": "0", "Number of tRNAs": "36", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sulfuritortus calidifontis", "strain": "strain=DSM 103923", "accession": "GCA_004346085.1", "taxid": 1914471, "species_taxid": 1914471, "relation_to_type": "type", "validated": true, "ani": 80.4737, "matched_fragments": 382, "total_fragments": 896, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfuritortus calidifontis", "strain": "strain=J1A", "accession": "GCA_003967275.1", "taxid": 1914471, "species_taxid": 1914471, "relation_to_type": "type", "validated": true, "ani": 80.466, "matched_fragments": 385, "total_fragments": 896, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azoarcus rhizosphaerae", "strain": "strain=CC-YHH848", "accession": "GCA_004801305.1", "taxid": 2565932, "species_taxid": 2565932, "relation_to_type": "type", "validated": true, "ani": 78.3911, "matched_fragments": 289, "total_fragments": 896, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospira oryzae", "strain": "strain=DSM 21223", "accession": "GCA_004217225.1", "taxid": 146939, "species_taxid": 146939, "relation_to_type": "type", "validated": true, "ani": 78.0569, "matched_fragments": 268, "total_fragments": 896, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azoarcus nasutitermitis", "strain": "strain=CC-YHH838", "accession": "GCA_004801295.1", "taxid": 2565930, "species_taxid": 2565930, "relation_to_type": "type", "validated": true, "ani": 78.012, "matched_fragments": 257, "total_fragments": 896, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Denitratisoma oestradiolicum", "strain": "strain=DSM 16959", "accession": "GCA_902813185.1", "taxid": 311182, "species_taxid": 311182, "relation_to_type": "type", "validated": true, "ani": 77.7123, "matched_fragments": 212, "total_fragments": 896, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodocyclus purpureus", "strain": "strain=DSM 168", "accession": "GCA_016653115.1", "taxid": 1067, "species_taxid": 1067, "relation_to_type": "type", "validated": true, "ani": 77.6516, "matched_fragments": 184, "total_fragments": 896, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Denitratisoma oestradiolicum", "strain": "strain=DSM 16959", "accession": "GCA_007844305.1", "taxid": 311182, "species_taxid": 311182, "relation_to_type": "type", "validated": true, "ani": 77.6507, "matched_fragments": 216, "total_fragments": 896, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfurimicrobium lacus", "strain": "strain=skT11", "accession": "GCA_011764585.1", "taxid": 2715678, "species_taxid": 2715678, "relation_to_type": "type", "validated": true, "ani": 77.6213, "matched_fragments": 219, "total_fragments": 896, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methyloversatilis universalis", "strain": "strain=FAM5", "accession": "GCA_000214035.3", "taxid": 378211, "species_taxid": 378211, "relation_to_type": "type", "validated": true, "ani": 77.3731, "matched_fragments": 226, "total_fragments": 896, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiohalobacter thiocyanaticus", "strain": "strain=Hrh1", "accession": "GCA_003932505.1", "taxid": 585455, "species_taxid": 585455, "relation_to_type": "type", "validated": true, "ani": 77.2308, "matched_fragments": 167, "total_fragments": 896, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfuriferula plumbiphila", "strain": "strain=NBRC 107929", "accession": "GCA_007992375.1", "taxid": 171865, "species_taxid": 171865, "relation_to_type": "type", "validated": true, "ani": 77.2103, "matched_fragments": 161, "total_fragments": 896, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinimonas koreensis", "strain": "strain=DSM 17726", "accession": "GCA_000428465.1", "taxid": 356302, "species_taxid": 356302, "relation_to_type": "type", "validated": true, "ani": 77.1904, "matched_fragments": 274, "total_fragments": 896, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfuriferula plumbiphila", "strain": "strain=Gro7", "accession": "GCA_009938015.1", "taxid": 171865, "species_taxid": 171865, "relation_to_type": "type", "validated": true, "ani": 77.1517, "matched_fragments": 163, "total_fragments": 896, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoxanthomonas taiwanensis", "strain": "strain=DSM 22914", "accession": "GCA_010093135.1", "taxid": 176598, "species_taxid": 176598, "relation_to_type": "type", "validated": true, "ani": 76.8704, "matched_fragments": 158, "total_fragments": 896, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chromobacterium alticapitis", "strain": "strain=MWU14-2602", "accession": "GCA_002924365.1", "taxid": 2073169, "species_taxid": 2073169, "relation_to_type": "type", "validated": true, "ani": 76.8305, "matched_fragments": 192, "total_fragments": 896, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas denitrificans", "strain": "strain=DSM 18045", "accession": "GCA_003056305.1", "taxid": 370769, "species_taxid": 370769, "relation_to_type": "type", "validated": true, "ani": 76.7803, "matched_fragments": 159, "total_fragments": 896, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Inmirania thermothiophila", "strain": "strain=DSM 100275", "accession": "GCA_003751635.1", "taxid": 1750597, "species_taxid": 1750597, "relation_to_type": "type", "validated": true, "ani": 76.6934, "matched_fragments": 201, "total_fragments": 896, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas shengliensis", "strain": "strain=CGMCC 1.6444", "accession": "GCA_900104135.1", "taxid": 419597, "species_taxid": 419597, "relation_to_type": "type", "validated": true, "ani": 76.6441, "matched_fragments": 147, "total_fragments": 896, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas salinisoli", "strain": "strain=SJ-92", "accession": "GCA_013425525.1", "taxid": 2752307, "species_taxid": 2752307, "relation_to_type": "type", "validated": true, "ani": 76.2485, "matched_fragments": 146, "total_fragments": 896, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stenotrophomonas ginsengisoli", "strain": "strain=DSM 24757", "accession": "GCA_001431485.1", "taxid": 336566, "species_taxid": 336566, "relation_to_type": "type", "validated": true, "ani": 76.2294, "matched_fragments": 91, "total_fragments": 896, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_009772925.1", "gtdb_species": "s__PFJX01 sp009772925", "ani": 99.9755, "matched_fragments": 894, "total_fragments": 896, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Thiobacillaceae;g__PFJX01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.98", "mean_intra_species_af": "1.00", "min_intra_species_af": "0.99", "num_clustered_genomes": 4, "status": "conclusive" }, { "accession": "GCA_016873935.1", "gtdb_species": "s__PFJX01 sp016873935", "ani": 93.8496, "matched_fragments": 656, "total_fragments": 896, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Thiobacillaceae;g__PFJX01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016719465.1", "gtdb_species": "s__PFJX01 sp016719465", "ani": 85.1267, "matched_fragments": 620, "total_fragments": 896, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Thiobacillaceae;g__PFJX01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.31", "min_intra_species_ani": "99.27", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.94", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_016219425.1", "gtdb_species": "s__PFJX01 sp016219425", "ani": 81.6647, "matched_fragments": 456, "total_fragments": 896, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Thiobacillaceae;g__PFJX01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002360535.1", "gtdb_species": "s__UBA3361 sp002360535", "ani": 80.8727, "matched_fragments": 453, "total_fragments": 896, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Thiobacillaceae;g__UBA3361", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013335435.1", "gtdb_species": "s__Parasulfuritortus sp013335435", "ani": 80.7448, "matched_fragments": 375, "total_fragments": 896, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Thiobacillaceae;g__Parasulfuritortus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004337445.1", "gtdb_species": "s__Parasulfuritortus cantonensis", "ani": 80.5511, "matched_fragments": 374, "total_fragments": 896, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Thiobacillaceae;g__Parasulfuritortus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002784045.1", "gtdb_species": "s__PFJX01 sp002784045", "ani": 79.9786, "matched_fragments": 401, "total_fragments": 896, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Thiobacillaceae;g__PFJX01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.74", "min_intra_species_ani": "99.63", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_002281555.1", "gtdb_species": "s__PFJX01 sp002281555", "ani": 79.6744, "matched_fragments": 431, "total_fragments": 896, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Thiobacillaceae;g__PFJX01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903835655.1", "gtdb_species": "s__PFJX01 sp903835655", "ani": 79.5282, "matched_fragments": 397, "total_fragments": 896, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Thiobacillaceae;g__PFJX01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.87", "min_intra_species_ani": "99.69", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.90", "num_clustered_genomes": 25, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Burkholderiales", "f__Thiobacillaceae", "g__PFJX01", "s__PFJX01 sp009772925" ], "_genome_taxon": [ "bacterium", "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Burkholderiales", "f__Thiobacillaceae", "g__PFJX01", "s__PFJX01 sp009772925", "Bacteria", "Pseudomonadota", "Gammaproteobacteria", "Burkholderiales", "Thiobacillaceae", "PFJX01", "PFJX01", "sp009772925" ], "_meo": [ { "id": "MEO_0000366", "label": "ground water" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }