{ "tc_result": [ { "organism_name": "Ruminococcus bromii", "strain": "strain=ATCC 27255", "accession": "GCA_002834225.1", "taxid": 40518, "species_taxid": 40518, "relation_to_type": "suspected-type", "validated": true, "ani": 80.1882, "matched_fragments": 198, "total_fragments": 446, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruminococcus bovis", "strain": "strain=JE7A12", "accession": "GCA_005601135.1", "taxid": 2564099, "species_taxid": 2564099, "relation_to_type": "type", "validated": true, "ani": 77.3448, "matched_fragments": 73, "total_fragments": 446, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 91.67, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014288065.1", "gtdb_species": "s__Ruminococcus_E sp003526955", "ani": 98.0505, "matched_fragments": 387, "total_fragments": 446, "gtdb_taxonomy": 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"d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Ruminococcus_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002834235.1", "gtdb_species": "s__Ruminococcus_E bromii_B", "ani": 81.1736, "matched_fragments": 223, "total_fragments": 446, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Ruminococcus_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.64", "min_intra_species_ani": "96.93", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.80", "num_clustered_genomes": 74, "status": "-" }, { "accession": "GCF_002834225.1", "gtdb_species": "s__Ruminococcus_E bromii", "ani": 80.1721, "matched_fragments": 199, "total_fragments": 446, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Ruminococcus_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.59", "min_intra_species_ani": "98.08", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.90", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCA_905215855.1", "gtdb_species": "s__Ruminococcus_E sp905215855", "ani": 80.0074, "matched_fragments": 194, "total_fragments": 446, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Ruminococcus_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.72", "min_intra_species_ani": "97.72", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.84", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_902766775.1", "gtdb_species": "s__Ruminococcus_E sp902766775", "ani": 79.4837, "matched_fragments": 155, "total_fragments": 446, "gtdb_taxonomy": 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"d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Ruminococcus_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002493635.1", "gtdb_species": "s__Ruminococcus_E sp002493635", "ani": 78.8464, "matched_fragments": 124, "total_fragments": 446, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Ruminococcus_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.92", "min_intra_species_ani": "97.46", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.85", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_902766885.1", "gtdb_species": "s__Ruminococcus_E sp902766885", "ani": 78.7658, "matched_fragments": 155, "total_fragments": 446, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Ruminococcus_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }