{
    "type": "genome",
    "identifier": "GCA_008933285.1",
    "organism": "Candidatus Brocadia sp.",
    "title": "Candidatus Brocadia sp.",
    "description": "derived from metagenome; fragmented assembly",
    "data type": "Genome sequencing and assembly",
    "organization": "Radboud University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_008933285.1",
        "bioproject": "PRJNA573876",
        "biosample": "SAMN12878397",
        "wgs_master": "WBVH00000000.1",
        "refseq_category": "na",
        "taxid": "2172549",
        "species_taxid": "2172549",
        "organism_name": "Candidatus Brocadia sp.",
        "infraspecific_name": "",
        "isolate": "SB37",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/10/09",
        "asm_name": "ASM893328v1",
        "submitter": "Radboud University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/933/285/GCA_008933285.1_ASM893328v1",
        "excluded_from_refseq": "derived from metagenome; fragmented assembly",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-10-09",
    "dateModified": "2019-10-09",
    "datePublished": "2019-10-09",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Candidatus Brocadia sp."
        ],
        "sample_taxid": [
            "2172549"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Netherlands:Ooijpolder"
        ],
        "sample_host_location_id": [],
        "data_size": "0.679 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 54.1,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2337240",
        "Number of Sequences": "743",
        "Longest Sequences (bp)": "11583",
        "N50 (bp)": "3443",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "43.8",
        "Number of CDSs": "1513",
        "Average Protein Length": "264.1",
        "Coding Ratio (%)": "51.3",
        "Number of rRNAs": "2",
        "Number of tRNAs": "20",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 54.1,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_002009475.1",
                "gtdb_species": "s__Brocadia caroliniensis",
                "ani": 89.2484,
                "matched_fragments": 305,
                "total_fragments": 379,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Brocadiae;o__Brocadiales;f__Brocadiaceae;g__Brocadia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_007618135.1",
                "gtdb_species": "s__Brocadia sp007618135",
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                "matched_fragments": 290,
                "total_fragments": 379,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Brocadiae;o__Brocadiales;f__Brocadiaceae;g__Brocadia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017347445.1",
                "gtdb_species": "s__Brocadia pituitae",
                "ani": 83.8662,
                "matched_fragments": 280,
                "total_fragments": 379,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Brocadiae;o__Brocadiales;f__Brocadiaceae;g__Brocadia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_000987375.1",
                "gtdb_species": "s__Brocadia fulgida",
                "ani": 81.3712,
                "matched_fragments": 258,
                "total_fragments": 379,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Brocadiae;o__Brocadiales;f__Brocadiaceae;g__Brocadia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.97",
                "min_intra_species_ani": "98.40",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_001753675.2",
                "gtdb_species": "s__Brocadia sapporoensis",
                "ani": 80.0207,
                "matched_fragments": 204,
                "total_fragments": 379,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Brocadiae;o__Brocadiales;f__Brocadiaceae;g__Brocadia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.53",
                "min_intra_species_ani": "96.30",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCA_015075005.1",
                "gtdb_species": "s__Brocadia sp015075005",
                "ani": 78.9473,
                "matched_fragments": 179,
                "total_fragments": 379,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Brocadiae;o__Brocadiales;f__Brocadiaceae;g__Brocadia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013360945.1",
                "gtdb_species": "s__Brocadia sp013360945",
                "ani": 78.5022,
                "matched_fragments": 174,
                "total_fragments": 379,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Brocadiae;o__Brocadiales;f__Brocadiaceae;g__Brocadia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900696655.1",
                "gtdb_species": "s__Jettenia sp900696655",
                "ani": 77.6777,
                "matched_fragments": 51,
                "total_fragments": 379,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Brocadiae;o__Brocadiales;f__Brocadiaceae;g__Jettenia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Planctomycetota",
        "c__Brocadiia",
        "o__Brocadiales",
        "f__Brocadiaceae",
        "g__Brocadia",
        "s__"
    ],
    "_genome_taxon": [
        "Candidatus",
        "Brocadia",
        "sp.",
        "d__Bacteria",
        "p__Planctomycetota",
        "c__Brocadiia",
        "o__Brocadiales",
        "f__Brocadiaceae",
        "g__Brocadia",
        "s__",
        "Bacteria",
        "Planctomycetota",
        "Brocadiia",
        "Brocadiales",
        "Brocadiaceae",
        "Brocadia",
        "s",
        "",
        ""
    ],
    "_meo": [
        {
            "id": "MEO_0000119",
            "label": "bioreactor"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}