{ "type": "genome", "identifier": "GCA_009360795.1", "organism": "Achromobacter sp.", "title": "Achromobacter sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Universidad Tecnologica Metropolitana (UTEM)", "publication": [ {} ], "properties": { "assembly_accession": "GCA_009360795.1", "bioproject": "PRJNA527865", "biosample": "SAMN11162471", "wgs_master": "SPEQ00000000.1", "refseq_category": "na", "taxid": "134375", "species_taxid": "134375", "organism_name": "Achromobacter sp.", "infraspecific_name": "", "isolate": "GV_Bin_8", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/10/25", "asm_name": "ASM936079v1", "submitter": "Universidad Tecnologica Metropolitana (UTEM)", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/360/795/GCA_009360795.1_ASM936079v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-10-25", "dateModified": "2019-10-25", "datePublished": "2019-10-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Achromobacter sp." ], "sample_taxid": [ "134375" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Chile" ], "sample_host_location_id": [], "data_size": "1.438 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 41.15, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "5216690", "Number of Sequences": "628", "Longest Sequences (bp)": "72918", "N50 (bp)": "12112", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.3", "Number of CDSs": "4436", "Average Protein Length": "306.1", "Coding Ratio (%)": "78.1", "Number of rRNAs": "1", "Number of tRNAs": "42", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Achromobacter denitrificans", "strain": "strain=LMG 1231", "accession": "GCA_902859715.1", "taxid": 32002, "species_taxid": 32002, "relation_to_type": "type", "validated": true, "ani": 98.6726, "matched_fragments": 1272, "total_fragments": 1420, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Achromobacter denitrificans", "strain": "strain=FDAARGOS_786", "accession": "GCA_013267395.1", "taxid": 32002, "species_taxid": 32002, "relation_to_type": "type", "validated": true, "ani": 98.6335, "matched_fragments": 1283, "total_fragments": 1420, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Achromobacter denitrificans", "strain": "strain=NBRC 15125", "accession": "GCA_001571365.1", "taxid": 32002, "species_taxid": 32002, "relation_to_type": "type", "validated": true, "ani": 98.6128, "matched_fragments": 1270, "total_fragments": 1420, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Achromobacter denitrificans", "strain": "strain=NCTC8582", "accession": "GCA_900444675.1", "taxid": 32002, "species_taxid": 32002, "relation_to_type": "type", "validated": true, "ani": 98.6123, "matched_fragments": 1265, "total_fragments": 1420, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Achromobacter veterisilvae", "strain": "strain=LMG 30378", "accession": "GCA_900496975.1", "taxid": 2069367, "species_taxid": 2069367, "relation_to_type": "type", "validated": true, "ani": 90.2649, "matched_fragments": 1090, "total_fragments": 1420, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter agilis", "strain": "strain=LMG 3411", "accession": "GCA_900496965.1", "taxid": 1353888, "species_taxid": 1353888, "relation_to_type": "type", 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"matched_fragments": 915, "total_fragments": 1420, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 41.15, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001571365.1", "gtdb_species": "s__Achromobacter denitrificans", "ani": 98.6103, "matched_fragments": 1271, "total_fragments": 1420, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Achromobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.42", "min_intra_species_ani": "98.61", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.90", "num_clustered_genomes": 14, "status": "conclusive" }, { "accession": "GCF_900496975.1", "gtdb_species": "s__Achromobacter veterisilvae", "ani": 90.2647, "matched_fragments": 1091, "total_fragments": 1420, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Achromobacter", 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95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002885955.2", "gtdb_species": "s__Achromobacter pulmonis_A", "ani": 87.5619, "matched_fragments": 932, "total_fragments": 1420, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Achromobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.97", "min_intra_species_ani": "98.79", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.89", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_902859735.1", "gtdb_species": "s__Achromobacter aegrifaciens", "ani": 86.9732, "matched_fragments": 1012, "total_fragments": 1420, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Achromobacter", "ani_circumscription_radius": 95.0106, 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