{ "type": "genome", "identifier": "GCA_009379975.1", "organism": "Actinophytocola sp.", "title": "Actinophytocola sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Princeton University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_009379975.1", "bioproject": "PRJNA494230", "biosample": "SAMN12830837", "wgs_master": "WHSS00000000.1", "refseq_category": "na", "taxid": "1872138", "species_taxid": "1872138", "organism_name": "Actinophytocola sp.", "infraspecific_name": "", "isolate": "Dino_bin13", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/10/28", "asm_name": "ASM937997v1", "submitter": "Princeton University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/379/975/GCA_009379975.1_ASM937997v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-10-28", "dateModified": "2019-10-28", "datePublished": "2019-10-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinophytocola sp." ], "sample_taxid": [ "1872138" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada:Albert" ], "sample_host_location_id": [], "data_size": "1.308 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4736794", "Number of Sequences": "297", "Longest Sequences (bp)": "97333", "N50 (bp)": "21048", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.2", "Number of CDSs": "4454", "Average Protein Length": "303.5", "Coding Ratio (%)": "85.6", "Number of rRNAs": "2", "Number of tRNAs": "35", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Haloechinothrix halophila", "strain": "strain=YIM 93223", "accession": "GCA_000504245.1", "taxid": 1069073, "species_taxid": 1069073, "relation_to_type": "type", "validated": true, "ani": 80.2578, "matched_fragments": 720, "total_fragments": 1428, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermocrispum municipale", "strain": "strain=DSM 44069", "accession": "GCA_000427825.1", "taxid": 37926, "species_taxid": 37926, "relation_to_type": "type", "validated": true, "ani": 79.2934, "matched_fragments": 498, "total_fragments": 1428, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis albispora", "strain": "strain=WP1", "accession": "GCA_003312875.1", "taxid": 1804986, 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"type", "validated": true, "ani": 78.8475, "matched_fragments": 603, "total_fragments": 1428, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis thermoflava", "strain": "strain=N1165", "accession": "GCA_000473265.1", "taxid": 84480, "species_taxid": 84480, "relation_to_type": "type", "validated": true, "ani": 78.8393, "matched_fragments": 591, "total_fragments": 1428, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis methanolica", "strain": "strain=239", "accession": "GCA_000371885.1", "taxid": 1814, "species_taxid": 1814, "relation_to_type": "type", "validated": true, "ani": 78.7978, "matched_fragments": 577, "total_fragments": 1428, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis anabasis", "strain": "strain=EGI 650086", "accession": "GCA_009765355.1", "taxid": 1840409, "species_taxid": 1840409, "relation_to_type": "type", "validated": true, "ani": 78.7851, "matched_fragments": 617, "total_fragments": 1428, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prauserella cavernicola", "strain": "strain=ASG 168", "accession": "GCA_016595675.1", "taxid": 2800127, "species_taxid": 2800127, "relation_to_type": "type", "validated": true, "ani": 78.7843, "matched_fragments": 584, "total_fragments": 1428, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis methanolica", "strain": "strain=239", "accession": "GCA_000739085.1", "taxid": 1814, "species_taxid": 1814, "relation_to_type": "type", "validated": true, "ani": 78.7228, "matched_fragments": 590, "total_fragments": 1428, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis alkalitolerans", "strain": "strain=SYSUP0005", "accession": "GCA_006152065.1", "taxid": 2547244, "species_taxid": 2547244, "relation_to_type": "type", "validated": true, "ani": 78.6682, "matched_fragments": 510, "total_fragments": 1428, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis cihanbeyliensis", "strain": "strain=DSM 45679", "accession": "GCA_006715045.1", "taxid": 1128664, "species_taxid": 1128664, "relation_to_type": "type", "validated": true, "ani": 78.6318, "matched_fragments": 539, "total_fragments": 1428, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis aidingensis", "strain": "strain=YIM 96748", "accession": "GCA_018885265.1", "taxid": 2842453, "species_taxid": 2842453, "relation_to_type": "type", "validated": true, "ani": 78.6305, "matched_fragments": 547, "total_fragments": 1428, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prauserella aidingensis", "strain": "strain=DSM 45266", "accession": "GCA_024171865.1", "taxid": 387890, "species_taxid": 387890, "relation_to_type": "type", "validated": true, "ani": 78.5537, "matched_fragments": 449, "total_fragments": 1428, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis balhimycina", "strain": "strain=DSM 44591", "accession": "GCA_000384295.1", "taxid": 208443, "species_taxid": 208443, "relation_to_type": "type", "validated": true, "ani": 78.5029, "matched_fragments": 595, "total_fragments": 1428, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis sulphurea", "strain": "strain=DSM 46092", "accession": "GCA_002564045.1", "taxid": 76022, "species_taxid": 76022, "relation_to_type": "type", "validated": true, "ani": 78.4824, "matched_fragments": 449, "total_fragments": 1428, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis lexingtonensis", "strain": "strain=DSM 44653", "accession": "GCA_014873755.1", "taxid": 218822, "species_taxid": 218822, "relation_to_type": "type", "validated": true, "ani": 78.4601, "matched_fragments": 625, "total_fragments": 1428, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis lexingtonensis", "strain": "strain=NRRL B-24131", "accession": "GCA_002156005.1", "taxid": 218822, "species_taxid": 218822, "relation_to_type": "type", "validated": true, "ani": 78.4316, "matched_fragments": 568, "total_fragments": 1428, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis saalfeldensis", "strain": "strain=DSM 44993", "accession": "GCA_900110575.1", "taxid": 394193, "species_taxid": 394193, "relation_to_type": "type", "validated": true, "ani": 78.4228, "matched_fragments": 549, "total_fragments": 1428, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis vastitatis", "strain": "strain=H5", "accession": "GCA_002234595.1", "taxid": 1905142, "species_taxid": 1905142, "relation_to_type": "type", "validated": true, "ani": 78.4094, "matched_fragments": 603, "total_fragments": 1428, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis tolypomycina", "strain": "strain=DSM 44544", "accession": "GCA_900105945.1", "taxid": 208445, "species_taxid": 208445, "relation_to_type": "type", "validated": true, "ani": 78.3903, "matched_fragments": 591, "total_fragments": 1428, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prauserella rugosa", "strain": "strain=NRRL B-2295", "accession": "GCA_000719975.1", "taxid": 43354, "species_taxid": 43354, "relation_to_type": "type", "validated": true, "ani": 78.3706, "matched_fragments": 447, "total_fragments": 1428, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haloechinothrix aidingensis", "strain": "strain=YIM 98757", "accession": "GCA_013450155.1", "taxid": 2752311, "species_taxid": 2752311, "relation_to_type": "type", "validated": true, "ani": 78.3599, "matched_fragments": 468, "total_fragments": 1428, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prauserella rugosa", "strain": "strain=DSM 43194", "accession": "GCA_007829565.1", 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"type", "validated": true, "ani": 78.3093, "matched_fragments": 542, "total_fragments": 1428, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharomonospora iraqiensis", "strain": "strain=IQ-H1", "accession": "GCA_000430445.1", "taxid": 52698, "species_taxid": 52698, "relation_to_type": "type", "validated": true, "ani": 78.302, "matched_fragments": 412, "total_fragments": 1428, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharomonospora xinjiangensis", "strain": "strain=XJ-54", "accession": "GCA_000258175.1", "taxid": 75294, "species_taxid": 75294, "relation_to_type": "type", "validated": true, "ani": 77.981, "matched_fragments": 367, "total_fragments": 1428, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharothrix texasensis", "strain": "strain=DSM 44231", "accession": "GCA_003752005.1", "taxid": 103734, "species_taxid": 103734, "relation_to_type": "type", "validated": true, "ani": 77.8419, 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"status": "conclusive" }, { "accession": "GCA_009377395.1", "gtdb_species": "s__Amycolatopsis_C sp009377395", "ani": 80.7514, "matched_fragments": 735, "total_fragments": 1428, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Amycolatopsis_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_009377475.1", "gtdb_species": "s__Amycolatopsis_C sp009377475", "ani": 80.3121, "matched_fragments": 732, "total_fragments": 1428, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Amycolatopsis_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" 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