{ "type": "genome", "identifier": "GCA_009694045.1", "organism": "Alphaproteobacteria bacterium", "title": "Alphaproteobacteria bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Evolutionary Genomics Group", "publication": [ {} ], "properties": { "assembly_accession": "GCA_009694045.1", "bioproject": "PRJNA521725", "biosample": "SAMN10915662", "wgs_master": "SHVY00000000.1", "refseq_category": "na", "taxid": "1913988", "species_taxid": "1913988", "organism_name": "Alphaproteobacteria bacterium", "infraspecific_name": "", "isolate": "Baikal-deep-G51", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/11/22", "asm_name": "ASM969404v1", "submitter": "Evolutionary Genomics Group", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/694/045/GCA_009694045.1_ASM969404v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-11-22", "dateModified": "2019-11-22", "datePublished": "2019-11-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Alphaproteobacteria bacterium" ], "sample_taxid": [ "1913988" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Russia: Lake Baikal" ], "sample_host_location_id": [], "data_size": "0.833 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 83.33, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3023165", "Number of Sequences": "83", "Longest Sequences (bp)": "128436", "N50 (bp)": "51015", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.1", "Number of CDSs": "3022", "Average Protein Length": "303.4", "Coding Ratio (%)": "91.0", "Number of rRNAs": "0", "Number of tRNAs": "36", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Tistlia consotensis", "strain": "strain=USBA 355", "accession": "GCA_900177295.1", "taxid": 1321365, "species_taxid": 1321365, "relation_to_type": "type", "validated": true, "ani": 76.6577, "matched_fragments": 271, "total_fragments": 967, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tistlia consotensis", "strain": "strain=DSM 21585", "accession": "GCA_900188055.1", "taxid": 1321365, "species_taxid": 1321365, "relation_to_type": "type", "validated": true, "ani": 76.629, "matched_fragments": 273, "total_fragments": 967, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum halopraeferens", "strain": "strain=DSM 3675", "accession": "GCA_000429625.1", "taxid": 34010, "species_taxid": 34010, "relation_to_type": "type", "validated": true, "ani": 76.454, "matched_fragments": 202, "total_fragments": 967, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseospirillum parvum", "strain": "strain=930I", "accession": "GCA_900100455.1", "taxid": 83401, "species_taxid": 83401, "relation_to_type": "type", "validated": true, "ani": 76.4419, "matched_fragments": 151, "total_fragments": 967, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovibrio sodomensis", "strain": "strain=DSM 9895", "accession": "GCA_016583645.1", "taxid": 1088, "species_taxid": 1088, "relation_to_type": "type", "validated": true, "ani": 76.4318, "matched_fragments": 165, "total_fragments": 967, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stella humosa", "strain": "strain=ATCC 43930", "accession": "GCA_006738645.1", "taxid": 94, "species_taxid": 94, "relation_to_type": "type", "validated": true, "ani": 76.412, "matched_fragments": 218, "total_fragments": 967, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stella humosa", "strain": "strain=DSM 5900", "accession": "GCA_003751345.1", "taxid": 94, "species_taxid": 94, "relation_to_type": "type", "validated": true, "ani": 76.4097, "matched_fragments": 217, "total_fragments": 967, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Skermanella stibiiresistens", "strain": "strain=SB22", "accession": "GCA_000576635.1", "taxid": 913326, "species_taxid": 913326, "relation_to_type": "type", "validated": true, "ani": 76.3927, "matched_fragments": 178, "total_fragments": 967, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Inquilinus limosus", "strain": "strain=DSM 16000", "accession": "GCA_000423185.1", "taxid": 171674, "species_taxid": 171674, "relation_to_type": "type", "validated": true, "ani": 76.3575, "matched_fragments": 241, "total_fragments": 967, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenibaculum pallidiluteum", "strain": "strain=SYSU D00532", "accession": "GCA_017355985.1", "taxid": 2812559, "species_taxid": 2812559, "relation_to_type": "type", "validated": true, "ani": 76.2939, "matched_fragments": 179, "total_fragments": 967, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Reyranella soli", "strain": "strain=NBRC 108950", "accession": "GCA_007992495.1", "taxid": 1230389, "species_taxid": 1230389, "relation_to_type": "type", "validated": true, "ani": 76.2038, "matched_fragments": 198, "total_fragments": 967, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blastochloris sulfoviridis", "strain": "strain=DSM 729", "accession": "GCA_008630065.1", "taxid": 50712, "species_taxid": 50712, "relation_to_type": "type", "validated": true, "ani": 76.2004, "matched_fragments": 133, "total_fragments": 967, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedomonas mirosovicensis", "strain": "strain=A1X5R2", "accession": "GCA_022569295.1", "taxid": 2908641, "species_taxid": 2908641, "relation_to_type": "type", "validated": true, "ani": 76.1872, "matched_fragments": 79, "total_fragments": 967, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vineibacter terrae", "strain": "strain=CC-CFT640", "accession": "GCA_008039615.1", "taxid": 2586908, "species_taxid": 2586908, "relation_to_type": "type", "validated": true, "ani": 76.1763, "matched_fragments": 201, "total_fragments": 967, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanibacterium hippocampi", "strain": "strain=CECT 7691", "accession": "GCA_900172325.1", "taxid": 745714, "species_taxid": 745714, "relation_to_type": "type", "validated": true, "ani": 76.1483, "matched_fragments": 174, "total_fragments": 967, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blastochloris tepida", "strain": "strain=GI", "accession": "GCA_003966715.1", "taxid": 2233851, "species_taxid": 2233851, "relation_to_type": "type", "validated": true, "ani": 76.0853, "matched_fragments": 134, "total_fragments": 967, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodospirillum rubrum", "strain": "strain=ATCC 11170", "accession": "GCA_000013085.1", "taxid": 1085, "species_taxid": 1085, "relation_to_type": "type", "validated": true, "ani": 75.9983, "matched_fragments": 110, "total_fragments": 967, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodospirillum rubrum", "strain": "strain=DSM 467", "accession": "GCA_019134555.1", "taxid": 1085, "species_taxid": 1085, "relation_to_type": "type", "validated": true, "ani": 75.9722, "matched_fragments": 112, "total_fragments": 967, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella yambaruensis", "strain": "strain=DSM 18801", "accession": "GCA_022899355.1", "taxid": 415996, "species_taxid": 415996, "relation_to_type": "type", "validated": true, "ani": 75.9657, "matched_fragments": 126, "total_fragments": 967, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium terricola", "strain": "strain=17Sr1-39", "accession": "GCA_006151805.1", "taxid": 2583531, "species_taxid": 2583531, "relation_to_type": "type", "validated": true, "ani": 75.9186, "matched_fragments": 175, "total_fragments": 967, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas cervicalis", "strain": "strain=ATCC 49957", "accession": "GCA_000164635.1", "taxid": 204525, "species_taxid": 204525, "relation_to_type": "type", "validated": true, "ani": 75.8682, "matched_fragments": 138, "total_fragments": 967, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseococcus thiosulfatophilus", "strain": "strain=RB-3", "accession": "GCA_017311575.1", "taxid": 35813, 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"total_fragments": 967, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter aerophilus", "strain": "strain=Ery1", "accession": "GCA_003581645.1", "taxid": 2306995, "species_taxid": 2306995, "relation_to_type": "type", "validated": true, "ani": 75.4299, "matched_fragments": 75, "total_fragments": 967, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 83.33, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_009694045.1", "gtdb_species": "s__SHVY01 sp009694045", "ani": 100.0, "matched_fragments": 961, "total_fragments": 967, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__SP197;f__SP197;g__SHVY01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_016869675.1", 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