{ "type": "genome", "identifier": "GCA_009695065.1", "organism": "Opitutus sp.", "title": "Opitutus sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Evolutionary Genomics Group", "publication": [ {} ], "properties": { "assembly_accession": "GCA_009695065.1", "bioproject": "PRJNA521725", "biosample": "SAMN10915811", "wgs_master": "SIBR00000000.1", "refseq_category": "na", "taxid": "1913982", "species_taxid": "1913982", "organism_name": "Opitutus sp.", "infraspecific_name": "", "isolate": "Baikal-deep-G238", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/11/22", "asm_name": "ASM969506v1", "submitter": "Evolutionary Genomics Group", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/695/065/GCA_009695065.1_ASM969506v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-11-22", "dateModified": "2019-11-22", "datePublished": "2019-11-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Opitutus sp." ], "sample_taxid": [ "1913982" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Russia: Lake Baikal" ], "sample_host_location_id": [], "data_size": "0.978 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 37.5, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3501092", "Number of Sequences": "61", "Longest Sequences (bp)": "229444", "N50 (bp)": "74283", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.7", "Number of CDSs": "2940", "Average Protein Length": "346.3", "Coding Ratio (%)": "87.2", "Number of rRNAs": "0", "Number of tRNAs": "21", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Opitutus terrae", "strain": "strain=PB90-1", "accession": "GCA_000019965.1", "taxid": 107709, "species_taxid": 107709, "relation_to_type": "type", "validated": true, "ani": 77.51, "matched_fragments": 199, "total_fragments": 1138, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nibricoccus aquaticus", "strain": "strain=HZ-65", "accession": "GCA_002310495.1", "taxid": 2576891, "species_taxid": 2576891, "relation_to_type": "type", "validated": true, "ani": 77.213, "matched_fragments": 137, "total_fragments": 1138, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rariglobus hedericola", "strain": "strain=53C-WASEF", "accession": "GCA_007559335.1", "taxid": 2597822, "species_taxid": 2597822, "relation_to_type": "type", "validated": true, "ani": 77.1347, "matched_fragments": 131, "total_fragments": 1138, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geminisphaera colitermitum", "strain": "strain=TAV2", "accession": "GCA_000171235.2", "taxid": 1148786, "species_taxid": 1148786, "relation_to_type": "type", "validated": true, "ani": 76.9097, "matched_fragments": 87, "total_fragments": 1138, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ereboglobus luteus", "strain": "strain=Ho45", "accession": "GCA_003096195.1", "taxid": 1796921, "species_taxid": 1796921, "relation_to_type": "type", "validated": true, "ani": 76.68, "matched_fragments": 95, "total_fragments": 1138, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cephaloticoccus primus", "strain": "strain=CAG34", "accession": "GCA_001580015.1", "taxid": 1548207, "species_taxid": 1548207, "relation_to_type": "type", "validated": true, "ani": 76.6301, "matched_fragments": 90, "total_fragments": 1138, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces radicis", "strain": "strain=DS1-2", "accession": "GCA_003626575.1", "taxid": 1750517, "species_taxid": 1750517, "relation_to_type": "type", "validated": true, "ani": 74.5783, "matched_fragments": 71, "total_fragments": 1138, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 37.5, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_009695065.1", "gtdb_species": "s__ER46 sp009695065", "ani": 100.0, "matched_fragments": 1135, "total_fragments": 1138, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__ER46", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.54", "min_intra_species_ani": "96.54", "mean_intra_species_af": "0.63", "min_intra_species_af": "0.63", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCA_903830425.1", "gtdb_species": "s__Opi-474 sp903830425", "ani": 78.5257, "matched_fragments": 207, "total_fragments": 1138, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__Opi-474", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.49", "min_intra_species_ani": "99.28", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.87", "num_clustered_genomes": 25, "status": "-" }, { "accession": "GCA_903855985.1", "gtdb_species": "s__Opi-474 sp903855985", "ani": 78.3972, "matched_fragments": 230, "total_fragments": 1138, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__Opi-474", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.84", "min_intra_species_ani": "99.84", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_903948415.1", "gtdb_species": "s__CAITWF01 sp903948415", "ani": 78.1624, "matched_fragments": 320, "total_fragments": 1138, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__CAITWF01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903862955.1", "gtdb_species": "s__Opi-474 sp903862955", "ani": 78.1161, "matched_fragments": 222, "total_fragments": 1138, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__Opi-474", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.96", "min_intra_species_ani": "99.95", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_903881475.1", "gtdb_species": "s__Opi-474 sp903881475", "ani": 78.0975, "matched_fragments": 219, "total_fragments": 1138, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__Opi-474", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.50", "min_intra_species_ani": "98.31", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.83", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCA_903840415.1", "gtdb_species": "s__CAITWF01 sp903840415", "ani": 78.0126, "matched_fragments": 244, "total_fragments": 1138, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__CAITWF01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.97", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_016793535.1", "gtdb_species": "s__ER46 sp016793535", "ani": 77.9556, "matched_fragments": 311, "total_fragments": 1138, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__ER46", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016209255.1", "gtdb_species": "s__ER46 sp016209255", "ani": 77.8019, "matched_fragments": 335, "total_fragments": 1138, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__ER46", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903848965.1", "gtdb_species": "s__ER46 sp903848965", "ani": 77.6351, "matched_fragments": 243, "total_fragments": 1138, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__ER46", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002304445.1", "gtdb_species": "s__Tous-C4FEB sp002304445", "ani": 77.4185, "matched_fragments": 176, "total_fragments": 1138, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__Tous-C4FEB", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.22", "min_intra_species_ani": "97.15", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.81", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_005792355.1", "gtdb_species": "s__ER46 sp005792355", "ani": 77.4063, "matched_fragments": 318, "total_fragments": 1138, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__ER46", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.97", "min_intra_species_ani": "99.97", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_016795545.1", "gtdb_species": "s__Lacunisphaera sp016795545", "ani": 77.1395, "matched_fragments": 156, "total_fragments": 1138, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__Lacunisphaera", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016199925.1", "gtdb_species": "s__JACQFT01 sp016199925", "ani": 77.0157, "matched_fragments": 154, "total_fragments": 1138, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__JACQFT01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002737275.1", "gtdb_species": "s__Tous-C4FEB sp002737275", "ani": 76.8253, "matched_fragments": 135, "total_fragments": 1138, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__Tous-C4FEB", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.398, "cell_length": -0.398, "doubling_h": null, "growth_tmp": 28.0, "optimum_tmp": null, "optimum_ph": 7.75, "genome_size": 5957606.0, "gc_content": 65.3, "coding_genes": 4567.333, "rRNA16S_genes": 1.0, "tRNA_genes": 62.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 1.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Verrucomicrobiota", "c__Verrucomicrobiae", "o__Opitutales", "f__Opitutaceae", "g__ER46", "s__ER46 sp009695065" ], "_genome_taxon": [ "Opitutus", "sp.", "d__Bacteria", "p__Verrucomicrobiota", "c__Verrucomicrobiae", "o__Opitutales", "f__Opitutaceae", "g__ER46", "s__ER46 sp009695065", "Bacteria", "Verrucomicrobiota", "Verrucomicrobiae", "Opitutales", "Opitutaceae", "ER46", "ER46", "sp009695065" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }