{ "type": "genome", "identifier": "GCA_009700115.1", "organism": "Actinomycetota bacterium", "title": "Actinomycetota bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS", "publication": [ {} ], "properties": { "assembly_accession": "GCA_009700115.1", "bioproject": "PRJNA449258", "biosample": "SAMN12745215", "wgs_master": "WLMU00000000.1", "refseq_category": "na", "taxid": "2900548", "species_taxid": "2900548", "organism_name": "Actinomycetota bacterium", "infraspecific_name": "", "isolate": "UFOp-RH-20apr16-428", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/11/23", "asm_name": "ASM970011v1", "submitter": "Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/700/115/GCA_009700115.1_ASM970011v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-11-23", "dateModified": "2019-11-23", "datePublished": "2019-11-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinomycetia bacterium" ], "sample_taxid": [ "1883427" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Czech Republic: Rimov Reservoir" ], "sample_host_location_id": [], "data_size": "0.636 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 84.89, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2233191", "Number of Sequences": "183", "Longest Sequences (bp)": "70042", "N50 (bp)": "17029", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "57.5", "Number of CDSs": "2033", "Average Protein Length": "311.0", "Coding Ratio (%)": "84.9", "Number of rRNAs": "1", "Number of tRNAs": "43", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rhabdothermincola salaria", "strain": "strain=EGI L10124", "accession": "GCA_021246445.1", "taxid": 2903142, "species_taxid": 2903142, "relation_to_type": "type", "validated": true, "ani": 76.8615, "matched_fragments": 76, "total_fragments": 663, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 84.89, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_009700115.1", "gtdb_species": "s__F1-20-MAGs160 sp009700115", "ani": 99.9999, "matched_fragments": 652, "total_fragments": 663, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__UBA8139;g__F1-20-MAGs160", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.37", "min_intra_species_ani": "98.87", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.85", "num_clustered_genomes": 10, "status": "conclusive" }, { "accession": "GCA_903867185.1", "gtdb_species": "s__F1-20-MAGs160 sp903867185", "ani": 89.6147, "matched_fragments": 540, "total_fragments": 663, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__UBA8139;g__F1-20-MAGs160", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016462055.1", "gtdb_species": "s__F1-20-MAGs160 sp016462055", "ani": 87.5666, "matched_fragments": 425, "total_fragments": 663, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__UBA8139;g__F1-20-MAGs160", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903827085.1", "gtdb_species": "s__F1-20-MAGs160 sp903827085", "ani": 81.3497, "matched_fragments": 272, "total_fragments": 663, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__UBA8139;g__F1-20-MAGs160", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_009699125.1", "gtdb_species": "s__F1-20-MAGs160 sp009699125", "ani": 80.7363, "matched_fragments": 324, "total_fragments": 663, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__UBA8139;g__F1-20-MAGs160", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.35", "min_intra_species_ani": "99.30", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_009703275.1", "gtdb_species": "s__F1-20-MAGs160 sp009703275", "ani": 80.408, "matched_fragments": 279, "total_fragments": 663, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__UBA8139;g__F1-20-MAGs160", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.87", "min_intra_species_ani": "98.58", "mean_intra_species_af": "0.79", "min_intra_species_af": "0.77", "num_clustered_genomes": 4, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Actinomycetota", "c__Acidimicrobiia", "o__Acidimicrobiales", "f__UBA8139", "g__F1-20-MAGs160", "s__F1-20-MAGs160 sp009700115" ], "_genome_taxon": [ "Actinomycetota", "bacterium", "d__Bacteria", "p__Actinomycetota", "c__Acidimicrobiia", "o__Acidimicrobiales", "f__UBA8139", "g__F1-20-MAGs160", "s__F1-20-MAGs160 sp009700115", "Bacteria", "Actinomycetota", "Acidimicrobiia", "Acidimicrobiales", "UBA8139", "F1-20-MAGs160", "F1-20-MAGs160", "sp009700115" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }