{
    "type": "genome",
    "identifier": "GCA_009702005.1",
    "organism": "Actinomycetota bacterium",
    "title": "Actinomycetota bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_009702005.1",
        "bioproject": "PRJNA449258",
        "biosample": "SAMN12745118",
        "wgs_master": "WLJB00000000.1",
        "refseq_category": "na",
        "taxid": "2900548",
        "species_taxid": "2900548",
        "organism_name": "Actinomycetota bacterium",
        "infraspecific_name": "",
        "isolate": "UFOp-RH-14apr17-32",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/11/23",
        "asm_name": "ASM970200v1",
        "submitter": "Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/702/005/GCA_009702005.1_ASM970200v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-11-23",
    "dateModified": "2019-11-23",
    "datePublished": "2019-11-23",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Actinomycetia bacterium"
        ],
        "sample_taxid": [
            "1883427"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Czech Republic: Rimov Reservoir"
        ],
        "sample_host_location_id": [],
        "data_size": "0.357 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 74.77,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1239324",
        "Number of Sequences": "121",
        "Longest Sequences (bp)": "77650",
        "N50 (bp)": "12558",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "48.4",
        "Number of CDSs": "1110",
        "Average Protein Length": "307.9",
        "Coding Ratio (%)": "82.7",
        "Number of rRNAs": "1",
        "Number of tRNAs": "27",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 74.77,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_009698045.1",
                "gtdb_species": "s__AAA044-D11 sp009698045",
                "ani": 99.1631,
                "matched_fragments": 293,
                "total_fragments": 359,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__Nanopelagicaceae;g__AAA044-D11",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.24",
                "min_intra_species_ani": "99.10",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 7,
                "status": "conclusive"
            },
            {
                "accession": "GCA_903838035.1",
                "gtdb_species": "s__AAA044-D11 sp903838035",
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                "matched_fragments": 111,
                "total_fragments": 359,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__Nanopelagicaceae;g__AAA044-D11",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.47",
                "min_intra_species_ani": "98.88",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCA_903898855.1",
                "gtdb_species": "s__AAA044-D11 sp903898855",
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                "matched_fragments": 96,
                "total_fragments": 359,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__Nanopelagicaceae;g__AAA044-D11",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903875815.1",
                "gtdb_species": "s__AAA044-D11 sp903875815",
                "ani": 77.8241,
                "matched_fragments": 60,
                "total_fragments": 359,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__Nanopelagicaceae;g__AAA044-D11",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903919375.1",
                "gtdb_species": "s__AAA044-D11 sp903919375",
                "ani": 77.5649,
                "matched_fragments": 68,
                "total_fragments": 359,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__Nanopelagicaceae;g__AAA044-D11",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.04",
                "min_intra_species_ani": "98.97",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_903938735.1",
                "gtdb_species": "s__AAA044-D11 sp903938735",
                "ani": 77.4264,
                "matched_fragments": 69,
                "total_fragments": 359,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__Nanopelagicaceae;g__AAA044-D11",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.02",
                "min_intra_species_ani": "98.98",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_000485495.1",
                "gtdb_species": "s__AAA044-D11 sp000485495",
                "ani": 77.3017,
                "matched_fragments": 64,
                "total_fragments": 359,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__Nanopelagicaceae;g__AAA044-D11",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903852585.1",
                "gtdb_species": "s__PALSA-747 sp903852585",
                "ani": 77.1186,
                "matched_fragments": 55,
                "total_fragments": 359,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__Nanopelagicaceae;g__PALSA-747",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.67",
                "min_intra_species_ani": "99.56",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 12,
                "status": "-"
            },
            {
                "accession": "GCA_903836945.1",
                "gtdb_species": "s__AAA044-D11 sp903836945",
                "ani": 77.0578,
                "matched_fragments": 76,
                "total_fragments": 359,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__Nanopelagicaceae;g__AAA044-D11",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.73",
                "min_intra_species_ani": "99.63",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 11,
                "status": "-"
            },
            {
                "accession": "GCA_903842675.1",
                "gtdb_species": "s__AAA044-D11 sp903842675",
                "ani": 77.0391,
                "matched_fragments": 57,
                "total_fragments": 359,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__Nanopelagicaceae;g__AAA044-D11",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.43",
                "min_intra_species_ani": "97.97",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 19,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Actinomycetota",
        "c__Actinomycetes",
        "o__Nanopelagicales",
        "f__Nanopelagicaceae",
        "g__AAA044-D11",
        "s__AAA044-D11 sp009698045"
    ],
    "_genome_taxon": [
        "Actinomycetota",
        "bacterium",
        "d__Bacteria",
        "p__Actinomycetota",
        "c__Actinomycetes",
        "o__Nanopelagicales",
        "f__Nanopelagicaceae",
        "g__AAA044-D11",
        "s__AAA044-D11 sp009698045",
        "Bacteria",
        "Actinomycetota",
        "Actinomycetes",
        "Nanopelagicales",
        "Nanopelagicaceae",
        "AAA044-D11",
        "AAA044-D11",
        "sp009698045"
    ],
    "_meo": [
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}