{
    "type": "genome",
    "identifier": "GCA_009705335.1",
    "organism": "Actinomycetota bacterium",
    "title": "Actinomycetota bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_009705335.1",
        "bioproject": "PRJNA449258",
        "biosample": "SAMN12745391",
        "wgs_master": "WLTO00000000.1",
        "refseq_category": "na",
        "taxid": "2900548",
        "species_taxid": "2900548",
        "organism_name": "Actinomycetota bacterium",
        "infraspecific_name": "",
        "isolate": "UFOp-RH-9nov16-9",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/11/23",
        "asm_name": "ASM970533v1",
        "submitter": "Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/705/335/GCA_009705335.1_ASM970533v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-11-23",
    "dateModified": "2019-11-23",
    "datePublished": "2019-11-23",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Actinomycetia bacterium"
        ],
        "sample_taxid": [
            "1883427"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Czech Republic: Rimov Reservoir"
        ],
        "sample_host_location_id": [],
        "data_size": "0.401 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 58.33,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1393035",
        "Number of Sequences": "127",
        "Longest Sequences (bp)": "41316",
        "N50 (bp)": "13401",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "47.3",
        "Number of CDSs": "1252",
        "Average Protein Length": "321.0",
        "Coding Ratio (%)": "86.5",
        "Number of rRNAs": "0",
        "Number of tRNAs": "35",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 58.33,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
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                "accession": "GCA_009698675.1",
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                "total_fragments": 406,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__Nanopelagicaceae;g__Planktophila",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.97",
                "min_intra_species_ani": "99.92",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 5,
                "status": "conclusive"
            },
            {
                "accession": "GCA_009702835.1",
                "gtdb_species": "s__Planktophila sp009702835",
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                "total_fragments": 406,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__Nanopelagicaceae;g__Planktophila",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.51",
                "min_intra_species_ani": "97.96",
                "mean_intra_species_af": "0.78",
                "min_intra_species_af": "0.76",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_903832395.1",
                "gtdb_species": "s__Planktophila sp903832395",
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                "total_fragments": 406,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__Nanopelagicaceae;g__Planktophila",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.52",
                "min_intra_species_ani": "97.23",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_009702845.1",
                "gtdb_species": "s__Planktophila sp009702845",
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                "matched_fragments": 126,
                "total_fragments": 406,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__Nanopelagicaceae;g__Planktophila",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_009691145.1",
                "gtdb_species": "s__Planktophila sp009691145",
                "ani": 78.7904,
                "matched_fragments": 154,
                "total_fragments": 406,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__Nanopelagicaceae;g__Planktophila",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_009699645.1",
                "gtdb_species": "s__Planktophila sp009699645",
                "ani": 78.7849,
                "matched_fragments": 138,
                "total_fragments": 406,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__Nanopelagicaceae;g__Planktophila",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903921405.1",
                "gtdb_species": "s__Planktophila sp903921405",
                "ani": 78.6372,
                "matched_fragments": 154,
                "total_fragments": 406,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__Nanopelagicaceae;g__Planktophila",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.46",
                "min_intra_species_ani": "97.48",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCA_009700025.1",
                "gtdb_species": "s__Planktophila sp009700025",
                "ani": 78.3432,
                "matched_fragments": 125,
                "total_fragments": 406,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__Nanopelagicaceae;g__Planktophila",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_007279945.1",
                "gtdb_species": "s__Planktophila sp007279945",
                "ani": 78.1338,
                "matched_fragments": 144,
                "total_fragments": 406,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__Nanopelagicaceae;g__Planktophila",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "status": "-"
            },
            {
                "accession": "GCA_015660815.1",
                "gtdb_species": "s__Planktophila sp015660815",
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                "matched_fragments": 182,
                "total_fragments": 406,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__Nanopelagicaceae;g__Planktophila",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_009701185.1",
                "gtdb_species": "s__Planktophila sp009701185",
                "ani": 77.9354,
                "matched_fragments": 142,
                "total_fragments": 406,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__Nanopelagicaceae;g__Planktophila",
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                "mean_intra_species_ani": "99.12",
                "min_intra_species_ani": "98.23",
                "mean_intra_species_af": "0.86",
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                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_009698445.1",
                "gtdb_species": "s__Planktophila sp009698445",
                "ani": 77.3386,
                "matched_fragments": 111,
                "total_fragments": 406,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__Nanopelagicaceae;g__Planktophila",
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                "mean_intra_species_ani": "99.86",
                "min_intra_species_ani": "99.84",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 3,
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            },
            {
                "accession": "GCA_903918325.1",
                "gtdb_species": "s__Planktophila sp903918325",
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                "matched_fragments": 91,
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__Nanopelagicaceae;g__Planktophila",
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                "mean_intra_species_ani": "98.89",
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            },
            {
                "accession": "GCA_903904665.1",
                "gtdb_species": "s__Planktophila sp903904665",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__Nanopelagicaceae;g__Planktophila",
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            },
            {
                "accession": "GCA_903852955.1",
                "gtdb_species": "s__Planktophila sp903852955",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__Nanopelagicaceae;g__Planktophila",
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                "mean_intra_species_ani": "98.15",
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                "status": "-"
            },
            {
                "accession": "GCA_903922745.1",
                "gtdb_species": "s__Planktophila sp903922745",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__Nanopelagicaceae;g__Planktophila",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Actinomycetota",
        "c__Actinomycetes",
        "o__Nanopelagicales",
        "f__Nanopelagicaceae",
        "g__Planktophila",
        "s__Planktophila sp009698675"
    ],
    "_genome_taxon": [
        "Actinomycetota",
        "bacterium",
        "d__Bacteria",
        "p__Actinomycetota",
        "c__Actinomycetes",
        "o__Nanopelagicales",
        "f__Nanopelagicaceae",
        "g__Planktophila",
        "s__Planktophila sp009698675",
        "Bacteria",
        "Actinomycetota",
        "Actinomycetes",
        "Nanopelagicales",
        "Nanopelagicaceae",
        "Planktophila",
        "Planktophila",
        "sp009698675"
    ],
    "_meo": [
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}