{ "type": "genome", "identifier": "GCA_009773045.1", "organism": "Rhodospirillaceae bacterium", "title": "Rhodospirillaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "The Ohio State University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_009773045.1", "bioproject": "PRJNA512237", "biosample": "SAMN11532995", "wgs_master": "WOUV00000000.1", "refseq_category": "na", "taxid": "1898112", "species_taxid": "1898112", "organism_name": "Rhodospirillaceae bacterium", "infraspecific_name": "", "isolate": "X2_MetaBAT.1", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/12/20", "asm_name": "ASM977304v1", "submitter": "The Ohio State University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/773/045/GCA_009773045.1_ASM977304v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-12-20", "dateModified": "2019-12-20", "datePublished": "2019-12-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Rhodospirillaceae bacterium" ], "sample_taxid": [ "1898112" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Ohio" ], "sample_host_location_id": [], "data_size": "0.723 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2565103", "Number of Sequences": "241", "Longest Sequences (bp)": "57412", "N50 (bp)": "15313", "Gap Ratio (%)": "0.007875", "GCcontent (%)": "61.2", "Number of CDSs": "2530", "Average Protein Length": "272.1", "Coding Ratio (%)": "80.5", "Number of rRNAs": "0", "Number of tRNAs": "38", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Magnetospirillum marisnigri", "strain": "strain=SP-1", "accession": "GCA_001650715.1", "taxid": 1285242, "species_taxid": 1285242, "relation_to_type": "type", "validated": true, "ani": 76.4189, "matched_fragments": 92, "total_fragments": 734, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Magnetospirillum kuznetsovii", "strain": "strain=LBB-42", "accession": "GCA_003284725.1", "taxid": 2053833, "species_taxid": 2053833, "relation_to_type": "type", "validated": true, "ani": 76.4071, "matched_fragments": 79, "total_fragments": 734, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Magnetospirillum caucaseum", "strain": "strain=SO-1", "accession": "GCA_000342045.1", "taxid": 1244869, "species_taxid": 1244869, "relation_to_type": "type", "validated": true, "ani": 76.2363, "matched_fragments": 86, "total_fragments": 734, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pararhodospirillum photometricum", "strain": "strain=DSM 122", "accession": "GCA_000284415.2", "taxid": 1084, "species_taxid": 1084, "relation_to_type": "type", "validated": true, "ani": 76.0458, "matched_fragments": 56, "total_fragments": 734, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Magnetospirillum magnetotacticum", "strain": "strain=MS-1", "accession": "GCA_000829825.1", "taxid": 188, "species_taxid": 188, "relation_to_type": "type", "validated": true, "ani": 76.0407, "matched_fragments": 75, "total_fragments": 734, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caenispirillum salinarum", "strain": "strain=AK4", "accession": "GCA_000315795.1", "taxid": 859058, "species_taxid": 859058, "relation_to_type": "type", "validated": true, "ani": 75.9501, "matched_fragments": 72, "total_fragments": 734, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseospira navarrensis", "strain": "strain=DSM 15114", "accession": "GCA_009601025.1", "taxid": 140058, "species_taxid": 140058, "relation_to_type": "type", "validated": true, "ani": 75.849, "matched_fragments": 72, "total_fragments": 734, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Inquilinus limosus", "strain": "strain=DSM 16000", "accession": "GCA_000423185.1", "taxid": 171674, "species_taxid": 171674, "relation_to_type": "type", "validated": true, "ani": 75.7211, "matched_fragments": 66, "total_fragments": 734, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum griseum", "strain": "strain=L-25-5 w-1", "accession": "GCA_003966125.1", "taxid": 2496639, "species_taxid": 2496639, "relation_to_type": "type", "validated": true, "ani": 75.6099, "matched_fragments": 68, "total_fragments": 734, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Telmatospirillum siberiense", "strain": "strain=26-4b1", "accession": "GCA_002845745.1", "taxid": 382514, "species_taxid": 382514, "relation_to_type": "type", "validated": true, "ani": 75.545, "matched_fragments": 74, "total_fragments": 734, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovastum atsumiense", "strain": "strain=G2-11", "accession": "GCA_937425535.1", "taxid": 504468, "species_taxid": 504468, "relation_to_type": "type", "validated": true, "ani": 75.4535, "matched_fragments": 56, "total_fragments": 734, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodopila globiformis", "strain": "strain=DSM 161", "accession": "GCA_002937115.1", "taxid": 1071, "species_taxid": 1071, "relation_to_type": "type", "validated": true, "ani": 75.3011, "matched_fragments": 50, "total_fragments": 734, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blastochloris tepida", "strain": "strain=GI", "accession": "GCA_003966715.1", "taxid": 2233851, "species_taxid": 2233851, "relation_to_type": "type", "validated": true, "ani": 75.2412, "matched_fragments": 52, "total_fragments": 734, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_009773045.1", "gtdb_species": "s__WOUV01 sp009773045", "ani": 100.0, "matched_fragments": 721, "total_fragments": 734, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Rhodospirillaceae;g__WOUV01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_015228695.1", "gtdb_species": "s__JADGDA01 sp015228695", "ani": 76.6813, "matched_fragments": 70, "total_fragments": 734, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Rhodospirillaceae;g__JADGDA01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.55", "min_intra_species_ani": "98.55", "mean_intra_species_af": "0.75", "min_intra_species_af": "0.75", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001650715.1", "gtdb_species": "s__Phaeospirillum marisnigri", "ani": 76.4189, "matched_fragments": 92, "total_fragments": 734, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Magnetospirillaceae;g__Phaeospirillum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003284725.1", "gtdb_species": "s__Phaeospirillum kuznetsovii", "ani": 76.4071, "matched_fragments": 79, "total_fragments": 734, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Magnetospirillaceae;g__Phaeospirillum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002105535.1", "gtdb_species": "s__Phaeospirillum sp002105535", "ani": 76.2531, "matched_fragments": 89, "total_fragments": 734, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Magnetospirillaceae;g__Phaeospirillum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016214125.1", "gtdb_species": "s__JACRPC01 sp016214125", "ani": 76.1391, "matched_fragments": 79, "total_fragments": 734, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__WMHbin7;g__JACRPC01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_015233585.1", "gtdb_species": "s__JADFXL01 sp015233585", "ani": 76.0433, "matched_fragments": 57, "total_fragments": 734, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Rhodospirillaceae;g__JADFXL01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000013085.1", "gtdb_species": "s__Rhodospirillum rubrum", "ani": 75.996, "matched_fragments": 83, "total_fragments": 734, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Rhodospirillaceae;g__Rhodospirillum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.74", "min_intra_species_ani": "96.31", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.96", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCA_001898825.1", "gtdb_species": "s__Magnetospirillum sp001898825", "ani": 75.8635, "matched_fragments": 91, "total_fragments": 734, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Magnetospirillaceae;g__Magnetospirillum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.98", "min_intra_species_ani": "95.98", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.88", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_009601025.1", "gtdb_species": "s__Rhodospira navarrensis", "ani": 75.8371, "matched_fragments": 73, "total_fragments": 734, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Rhodospirillaceae;g__Rhodospira", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902729415.1", "gtdb_species": "s__Phaeospirillum magnetica_A", "ani": 75.7824, "matched_fragments": 89, "total_fragments": 734, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Magnetospirillaceae;g__Phaeospirillum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002753155.1", "gtdb_species": "s__WMHbin7 sp002753155", "ani": 75.7726, "matched_fragments": 65, "total_fragments": 734, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__WMHbin7;g__WMHbin7", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.88", "min_intra_species_ani": "99.88", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000423185.1", "gtdb_species": "s__Inquilinus limosus", "ani": 75.7211, "matched_fragments": 66, "total_fragments": 734, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__DSM-16000;f__Inquilinaceae;g__Inquilinus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014197915.1", "gtdb_species": "s__Rhodospira visakhapatnamensis", "ani": 75.6448, "matched_fragments": 89, "total_fragments": 734, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Rhodospirillaceae;g__Rhodospira", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013349665.1", "gtdb_species": "s__Telmatospirillum sp013349665", "ani": 75.5732, "matched_fragments": 64, "total_fragments": 734, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Magnetospirillaceae;g__Telmatospirillum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900230255.1", "gtdb_species": "s__Caenispirillum bisanense", "ani": 75.5642, "matched_fragments": 89, "total_fragments": 734, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Rhodospirillaceae;g__Caenispirillum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_015232335.1", "gtdb_species": "s__WMHbin7 sp015232335", "ani": 75.5265, "matched_fragments": 64, "total_fragments": 734, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__WMHbin7;g__WMHbin7", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003165295.1", "gtdb_species": "s__BOG-933 sp003165295", "ani": 74.991, "matched_fragments": 52, "total_fragments": 734, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Azospirillales;f__Azospirillaceae;g__BOG-933", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.124, "cell_length": 0.412, "doubling_h": 0.931, "growth_tmp": 29.068, "optimum_tmp": 30.167, "optimum_ph": 7.012, "genome_size": 4958622.479, "gc_content": 62.84, "coding_genes": 4573.287, "rRNA16S_genes": 4.82, "tRNA_genes": 64.75, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.839, "range_salinity": 0.666, "facultative_respiration": 0.174, "anaerobic_respiration": 0.158, "aerobic_respiration": 0.666, "mesophilic_range_tmp": 0.916, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.083, "bacillus_cell_shape": 0.509, "coccus_cell_shape": 0.018, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.036, "spiral_cell_shape": 0.436 }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Alphaproteobacteria", "o__Rhodospirillales", "f__Rhodospirillaceae", "g__WOUV01", "s__WOUV01 sp009773045" ], "_genome_taxon": [ "Rhodospirillaceae", "bacterium", "d__Bacteria", "p__Pseudomonadota", "c__Alphaproteobacteria", "o__Rhodospirillales", "f__Rhodospirillaceae", "g__WOUV01", "s__WOUV01 sp009773045", "Bacteria", "Pseudomonadota", "Alphaproteobacteria", "Rhodospirillales", "Rhodospirillaceae", "WOUV01", "WOUV01", "sp009773045" ], "_meo": [ { "id": "MEO_0000366", "label": "ground water" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }