{ "type": "genome", "identifier": "GCA_009836065.1", "organism": "Acidimicrobiia bacterium", "title": "Acidimicrobiia bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of Queensland", "publication": [ {} ], "properties": { "assembly_accession": "GCA_009836065.1", "bioproject": "PRJNA555144", "biosample": "SAMN12598467", "wgs_master": "VXWE00000000.1", "refseq_category": "na", "taxid": "2080302", "species_taxid": "2080302", "organism_name": "Acidimicrobiia bacterium", "infraspecific_name": "", "isolate": "SB0668_bin_10", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/01/09", "asm_name": "ASM983606v1", "submitter": "University of Queensland", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/836/065/GCA_009836065.1_ASM983606v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-01-09", "dateModified": "2020-01-09", "datePublished": "2020-01-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Acidimicrobiia bacterium" ], "sample_taxid": [ "2080302" ], "sample_host_organism": [ "Ircinia ramosa" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Australia: Great Barrier Reef" ], "sample_host_location_id": [], "data_size": "0.985 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.62, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3516749", "Number of Sequences": "73", "Longest Sequences (bp)": "179958", "N50 (bp)": "76904", "Gap Ratio (%)": "0.025592", "GCcontent (%)": "64.8", "Number of CDSs": "3207", "Average Protein Length": "333.2", "Coding Ratio (%)": "91.1", "Number of rRNAs": "0", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rhabdothermincola salaria", "strain": "strain=EGI L10124", "accession": "GCA_021246445.1", "taxid": 2903142, "species_taxid": 2903142, "relation_to_type": "type", "validated": true, "ani": 76.8102, "matched_fragments": 168, "total_fragments": 1134, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhabdothermincola sediminis", "strain": "strain=SYSU G02662", "accession": "GCA_014805525.1", "taxid": 2751370, "species_taxid": 2751370, "relation_to_type": "type", "validated": true, "ani": 76.7997, "matched_fragments": 109, "total_fragments": 1134, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomarinicola tropica", "strain": "strain=SCSIO 58843", "accession": "GCA_009650215.1", "taxid": 2789776, "species_taxid": 2789776, "relation_to_type": "type", "validated": true, "ani": 76.7154, "matched_fragments": 133, "total_fragments": 1134, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desertimonas flava", "strain": "strain=SYSU D60003", "accession": "GCA_003426815.1", "taxid": 2064846, "species_taxid": 2064846, "relation_to_type": "type", "validated": true, "ani": 75.909, "matched_fragments": 96, "total_fragments": 1134, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ilumatobacter fluminis", "strain": "strain=DSM 18936", "accession": "GCA_004364865.1", "taxid": 467091, "species_taxid": 467091, "relation_to_type": "type", "validated": true, "ani": 75.4531, "matched_fragments": 90, "total_fragments": 1134, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura graeca", "strain": "strain=32-07", "accession": "GCA_019175365.1", "taxid": 2750812, "species_taxid": 2750812, "relation_to_type": "type", "validated": true, "ani": 75.2967, "matched_fragments": 67, "total_fragments": 1134, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces diacarni", "strain": "strain=LHW51701", "accession": "GCA_003323715.1", "taxid": 2800381, "species_taxid": 2800381, "relation_to_type": "type", "validated": true, "ani": 75.2019, "matched_fragments": 60, "total_fragments": 1134, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Quadrisphaera setariae", "strain": "strain=DD2A", "accession": "GCA_008041935.1", "taxid": 2593304, "species_taxid": 2593304, "relation_to_type": "type", "validated": true, "ani": 75.1166, "matched_fragments": 62, "total_fragments": 1134, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis cihanbeyliensis", "strain": "strain=DSM 45679", "accession": "GCA_006715045.1", "taxid": 1128664, "species_taxid": 1128664, "relation_to_type": "type", "validated": true, "ani": 75.0896, "matched_fragments": 60, "total_fragments": 1134, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura litoris", "strain": "strain=NEAU-AAG5", "accession": "GCA_009733595.1", "taxid": 2678616, "species_taxid": 2678616, "relation_to_type": "type", "validated": true, "ani": 75.0846, "matched_fragments": 68, "total_fragments": 1134, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomycetospora cinnamomea", "strain": "strain=DSM 45771", "accession": "GCA_003096675.1", "taxid": 663609, "species_taxid": 663609, "relation_to_type": "type", "validated": true, "ani": 74.9966, "matched_fragments": 75, "total_fragments": 1134, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces griseolus", "strain": "strain=NRRL B-2925", "accession": "GCA_000721185.1", "taxid": 1909, "species_taxid": 1909, "relation_to_type": "type", "validated": true, "ani": 74.9945, "matched_fragments": 58, "total_fragments": 1134, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces phyllanthi", "strain": "strain=TISTR 2346", "accession": "GCA_009377205.1", "taxid": 1803180, "species_taxid": 1803180, "relation_to_type": "type", "validated": true, "ani": 74.9821, "matched_fragments": 75, "total_fragments": 1134, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Modestobacter roseus", "strain": "strain=DSM 45764", "accession": "GCA_007994135.1", "taxid": 1181884, "species_taxid": 1181884, "relation_to_type": "type", "validated": true, "ani": 74.9312, "matched_fragments": 63, "total_fragments": 1134, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus silvisoli", "strain": "strain=c25j21", "accession": "GCA_009909145.1", "taxid": 2697031, "species_taxid": 2697031, "relation_to_type": "type", "validated": true, "ani": 74.6105, "matched_fragments": 53, "total_fragments": 1134, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 99.62, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_009842675.1", "gtdb_species": "s__Bin134 sp009842675", "ani": 96.6775, "matched_fragments": 956, "total_fragments": 1134, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__Bin134;g__Bin134", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.86", "min_intra_species_ani": "96.18", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.88", "num_clustered_genomes": 13, "status": "conclusive" }, { "accession": "GCA_009843565.1", "gtdb_species": "s__Bin134 sp009843565", "ani": 85.8448, "matched_fragments": 395, "total_fragments": 1134, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__Bin134;g__Bin134", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002239105.1", "gtdb_species": "s__Bin134 sp002239105", "ani": 84.3213, "matched_fragments": 850, "total_fragments": 1134, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__Bin134;g__Bin134", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002346745.1", "gtdb_species": "s__S20-B6 sp002346745", "ani": 77.3383, "matched_fragments": 127, "total_fragments": 1134, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__MedAcidi-G1;g__S20-B6", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.72", "min_intra_species_ani": "96.97", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.81", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCA_016845305.1", "gtdb_species": "s__UBA9410 sp016845305", "ani": 77.2878, "matched_fragments": 165, "total_fragments": 1134, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__MedAcidi-G1;g__UBA9410", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_009840735.1", "gtdb_species": "s__VXNF01 sp009840735", "ani": 77.0808, "matched_fragments": 153, "total_fragments": 1134, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__Bin134;g__VXNF01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.98", "min_intra_species_ani": "98.92", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.88", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_014805525.1", "gtdb_species": "s__Rhabdothermincola sediminis", "ani": 76.7997, "matched_fragments": 109, "total_fragments": 1134, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__UBA8139;g__Rhabdothermincola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009650215.1", "gtdb_species": "s__Actinomarinicola tropica", "ani": 76.7303, "matched_fragments": 132, "total_fragments": 1134, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__SKKL01;g__Actinomarinicola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_007121465.1", "gtdb_species": "s__SKKL01 sp007121465", "ani": 76.6141, "matched_fragments": 102, "total_fragments": 1134, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__SKKL01;g__SKKL01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016794585.1", "gtdb_species": "s__JAEUJM01 sp016794585", "ani": 76.5863, "matched_fragments": 187, "total_fragments": 1134, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__JAEUJM01;g__JAEUJM01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_019048865.1", "gtdb_species": "s__Aquihabitans sp019048865", "ani": 76.4128, "matched_fragments": 157, "total_fragments": 1134, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__JAAYBP01;g__Aquihabitans", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017577565.1", "gtdb_species": "s__ZC4RG19 sp017577565", "ani": 76.3638, "matched_fragments": 145, "total_fragments": 1134, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__JACDCH01;g__ZC4RG19", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016649895.1", "gtdb_species": "s__Actinomarinicola sp016649895", "ani": 76.3551, "matched_fragments": 113, "total_fragments": 1134, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__SKKL01;g__Actinomarinicola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013694495.1", "gtdb_species": "s__JACDCH01 sp013694495", "ani": 76.1708, "matched_fragments": 110, "total_fragments": 1134, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__JACDCH01;g__JACDCH01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903868545.1", "gtdb_species": "s__CAIPVR01 sp903868545", "ani": 76.1507, "matched_fragments": 129, "total_fragments": 1134, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microtrichaceae;g__CAIPVR01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.51", "min_intra_species_ani": "99.50", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.86", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_006715045.1", "gtdb_species": "s__Amycolatopsis_D cihanbeyliensis", "ani": 75.0896, "matched_fragments": 60, "total_fragments": 1134, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Amycolatopsis_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003096675.1", "gtdb_species": "s__Actinomycetospora cinnamomea", "ani": 74.9966, "matched_fragments": 75, "total_fragments": 1134, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Actinomycetospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009377205.1", "gtdb_species": "s__Streptomyces phyllanthi", "ani": 74.9884, "matched_fragments": 74, "total_fragments": 1134, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Actinomycetota", "c__Acidimicrobiia", "o__Acidimicrobiales", "f__Bin134", "g__Poriferisocius", "s__Poriferisocius sp009842675" ], "_genome_taxon": [ "Acidimicrobiia", "bacterium", "d__Bacteria", "p__Actinomycetota", "c__Acidimicrobiia", "o__Acidimicrobiales", "f__Bin134", "g__Poriferisocius", "s__Poriferisocius sp009842675", "Bacteria", "Actinomycetota", "Acidimicrobiia", "Acidimicrobiales", "Bin134", "Poriferisocius", "Poriferisocius", "sp009842675" ], "_meo": [ { "id": "MEO_0002677", "label": "sponge" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }