{ "type": "genome", "identifier": "GCA_009840205.1", "organism": "Holophagales bacterium", "title": "Holophagales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of Queensland", "publication": [ {} ], "properties": { "assembly_accession": "GCA_009840205.1", "bioproject": "PRJNA555144", "biosample": "SAMN12598256", "wgs_master": "VXOB00000000.1", "refseq_category": "na", "taxid": "2478486", "species_taxid": "2478486", "organism_name": "Holophagales bacterium", "infraspecific_name": "", "isolate": "SB0662_bin_22", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/01/09", "asm_name": "ASM984020v1", "submitter": "University of Queensland", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/840/205/GCA_009840205.1_ASM984020v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-01-09", "dateModified": "2020-01-09", "datePublished": "2020-01-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Holophagales bacterium" ], "sample_taxid": [ "2478486" ], "sample_host_organism": [ "Ircinia ramosa" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Australia: Great Barrier Reef" ], "sample_host_location_id": [], "data_size": "1.207 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4414988", "Number of Sequences": "69", "Longest Sequences (bp)": "534503", "N50 (bp)": "105880", "Gap Ratio (%)": "0.011552", "GCcontent (%)": "68.4", "Number of CDSs": "3605", "Average Protein Length": "379.8", "Coding Ratio (%)": "93.0", "Number of rRNAs": "2", "Number of tRNAs": "52", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Luteitalea pratensis", "strain": "strain=DSM 100886; HEG_-6_39", "accession": "GCA_001618865.1", "taxid": 1855912, "species_taxid": 1855912, "relation_to_type": "type", "validated": true, "ani": 75.3771, "matched_fragments": 95, "total_fragments": 1437, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga subterranea", "strain": "strain=DSM 14364", "accession": "GCA_003350535.1", "taxid": 186651, "species_taxid": 186651, "relation_to_type": "type", "validated": true, "ani": 75.2299, "matched_fragments": 63, "total_fragments": 1437, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Malikia granosa", "strain": "strain=P1", "accession": "GCA_002980595.1", "taxid": 263067, "species_taxid": 263067, "relation_to_type": "type", "validated": true, "ani": 75.2246, "matched_fragments": 74, "total_fragments": 1437, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Plasticicumulans lactativorans", "strain": "strain=DSM 25287", "accession": "GCA_004341245.1", "taxid": 1133106, "species_taxid": 1133106, "relation_to_type": "type", "validated": true, "ani": 75.212, "matched_fragments": 111, "total_fragments": 1437, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagibius marinus", "strain": "strain=NBU2595", "accession": "GCA_014925385.1", "taxid": 2762760, "species_taxid": 2762760, "relation_to_type": "type", "validated": true, "ani": 75.1906, "matched_fragments": 93, "total_fragments": 1437, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Motilibacter aurantiacus", "strain": "strain=K478", "accession": "GCA_011250645.1", "taxid": 2714955, "species_taxid": 2714955, "relation_to_type": "type", "validated": true, "ani": 75.0252, "matched_fragments": 112, "total_fragments": 1437, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pyxidicoccus trucidator", "strain": "strain=CA060A", "accession": "GCA_010894435.1", "taxid": 2709662, "species_taxid": 2709662, "relation_to_type": "type", "validated": true, "ani": 74.9427, "matched_fragments": 111, "total_fragments": 1437, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura nitritigenes", "strain": "strain=L46", "accession": "GCA_017573545.1", "taxid": 134602, "species_taxid": 134602, "relation_to_type": "type", "validated": true, "ani": 74.9228, "matched_fragments": 220, "total_fragments": 1437, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium nonmethylotrophicum", "strain": "strain=6HR-1", "accession": "GCA_004745635.1", "taxid": 1141884, "species_taxid": 1141884, "relation_to_type": "type", "validated": true, "ani": 74.9094, "matched_fragments": 186, "total_fragments": 1437, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Frankia asymbiotica", "strain": "strain=NRRL B-16386", "accession": "GCA_001983105.1", "taxid": 1834516, "species_taxid": 1834516, "relation_to_type": "type", "validated": true, "ani": 74.8938, "matched_fragments": 194, "total_fragments": 1437, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pyxidicoccus caerfyrddinensis", "strain": "strain=CA032A", "accession": "GCA_010894405.1", "taxid": 2709663, "species_taxid": 2709663, "relation_to_type": "type", "validated": true, "ani": 74.8917, "matched_fragments": 137, "total_fragments": 1437, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salsipaludibacter albus", "strain": "strain=AS10", "accession": "GCA_019798055.1", "taxid": 2849650, "species_taxid": 2849650, "relation_to_type": "type", "validated": true, "ani": 74.8808, "matched_fragments": 76, "total_fragments": 1437, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Janibacter melonis", "strain": "strain=NBRC107855", "accession": "GCA_020567375.1", "taxid": 262209, "species_taxid": 262209, "relation_to_type": "type", "validated": true, "ani": 74.8503, "matched_fragments": 99, "total_fragments": 1437, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura atramentaria", "strain": "strain=SF2197", "accession": "GCA_000381885.1", "taxid": 1990, "species_taxid": 1990, "relation_to_type": "type", "validated": true, "ani": 74.8253, "matched_fragments": 158, "total_fragments": 1437, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas jinjuensis", "strain": "strain=JCM 21621", "accession": "GCA_900103845.1", "taxid": 198616, "species_taxid": 198616, "relation_to_type": "type", "validated": true, "ani": 74.8172, "matched_fragments": 86, "total_fragments": 1437, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraconexibacter algicola", "strain": "strain=Seoho-28", "accession": "GCA_003044185.1", "taxid": 2133960, "species_taxid": 2133960, "relation_to_type": "type", "validated": true, "ani": 74.8139, "matched_fragments": 127, "total_fragments": 1437, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum oleiclasticum", "strain": "strain=RWY-5-1-1", "accession": "GCA_013423485.1", "taxid": 2735135, "species_taxid": 2735135, "relation_to_type": "type", "validated": true, "ani": 74.8127, "matched_fragments": 145, "total_fragments": 1437, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Archangium violaceum", "strain": "strain=Cb vi76", "accession": "GCA_000733295.1", "taxid": 83451, "species_taxid": 83451, "relation_to_type": "type", "validated": true, "ani": 74.761, "matched_fragments": 108, "total_fragments": 1437, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_009836625.1", "gtdb_species": "s__WTGL01 sp009836625", "ani": 98.0299, "matched_fragments": 1308, "total_fragments": 1437, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Thermoanaerobaculia;o__UBA5704;f__QQVD01;g__WTGL01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.03", "min_intra_species_ani": "98.03", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.91", "num_clustered_genomes": 5, "status": "conclusive" }, { "accession": "GCA_009845425.1", "gtdb_species": "s__WTGL01 sp009845425", "ani": 94.652, "matched_fragments": 1282, "total_fragments": 1437, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Thermoanaerobaculia;o__UBA5704;f__QQVD01;g__WTGL01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_009837885.1", "gtdb_species": "s__WTGL01 sp009837885", "ani": 92.8218, "matched_fragments": 1242, "total_fragments": 1437, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Thermoanaerobaculia;o__UBA5704;f__QQVD01;g__WTGL01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.92", "min_intra_species_ani": "99.92", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_009843505.1", "gtdb_species": "s__WTGL01 sp009843505", "ani": 92.2597, "matched_fragments": 1248, "total_fragments": 1437, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Thermoanaerobaculia;o__UBA5704;f__QQVD01;g__WTGL01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.97", "min_intra_species_ani": "99.97", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_011525365.1", "gtdb_species": "s__WTGL01 sp011525365", "ani": 92.1819, "matched_fragments": 1228, "total_fragments": 1437, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Thermoanaerobaculia;o__UBA5704;f__QQVD01;g__WTGL01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_009837085.1", "gtdb_species": "s__WTGL01 sp009837085", "ani": 91.8553, "matched_fragments": 1142, "total_fragments": 1437, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Thermoanaerobaculia;o__UBA5704;f__QQVD01;g__WTGL01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.78", "min_intra_species_ani": "99.78", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.95", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_012270995.1", "gtdb_species": "s__WTGL01 sp012270995", "ani": 87.7269, "matched_fragments": 1071, "total_fragments": 1437, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Thermoanaerobaculia;o__UBA5704;f__QQVD01;g__WTGL01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -1.0, "cell_length": 0.0, "doubling_h": null, "growth_tmp": 31.5, "optimum_tmp": 32.5, "optimum_ph": 7.15, "genome_size": 3708525.0, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Acidobacteriota", "c__Thermoanaerobaculia", "o__Multivoradales", "f__Multivoraceae", "g__Multivorans", "s__Multivorans sp009836625" ], "_genome_taxon": [ "Holophagales", "bacterium", "d__Bacteria", "p__Acidobacteriota", "c__Thermoanaerobaculia", "o__Multivoradales", "f__Multivoraceae", "g__Multivorans", "s__Multivorans sp009836625", "Bacteria", "Acidobacteriota", "Thermoanaerobaculia", "Multivoradales", "Multivoraceae", "Multivorans", "Multivorans", "sp009836625" ], "_meo": [ { "id": "MEO_0002677", "label": "sponge" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }