{ "type": "genome", "identifier": "GCA_009909005.1", "organism": "Alphaproteobacteria bacterium", "title": "Alphaproteobacteria bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Montana State University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_009909005.1", "bioproject": "PRJNA598870", "biosample": "SAMN13763259", "wgs_master": "JAAAOG000000000.1", "refseq_category": "na", "taxid": "1913988", "species_taxid": "1913988", "organism_name": "Alphaproteobacteria bacterium", "infraspecific_name": "", "isolate": "GSL.Bin18", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/01/20", "asm_name": "ASM990900v1", "submitter": "Montana State University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/909/005/GCA_009909005.1_ASM990900v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-01-20", "dateModified": "2020-01-20", "datePublished": "2020-01-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Alphaproteobacteria bacterium" ], "sample_taxid": [ "1913988" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Bridger Bay in Great Salt Lake, Utah" ], "sample_host_location_id": [], "data_size": "1.172 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4227643", "Number of Sequences": "230", "Longest Sequences (bp)": "96687", "N50 (bp)": "26244", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.7", "Number of CDSs": "3671", "Average Protein Length": "318.3", "Coding Ratio (%)": "82.9", "Number of rRNAs": "0", "Number of tRNAs": "50", "Number of CRISPRs": "6" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Inquilinus limosus", "strain": "strain=DSM 16000", "accession": "GCA_000423185.1", "taxid": 171674, "species_taxid": 171674, "relation_to_type": "type", "validated": true, "ani": 77.4498, "matched_fragments": 400, "total_fragments": 1295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum thermophilum", "strain": "strain=CFH 70021", "accession": "GCA_003130795.1", "taxid": 2202148, "species_taxid": 2202148, "relation_to_type": "type", "validated": true, "ani": 77.165, "matched_fragments": 348, "total_fragments": 1295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum tabaci", "strain": "strain=W712", "accession": "GCA_014596085.1", "taxid": 2752310, "species_taxid": 2752310, "relation_to_type": "type", "validated": true, "ani": 77.098, "matched_fragments": 305, "total_fragments": 1295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum picis", "strain": "strain=IMMIB TAR-3", "accession": "GCA_017876115.1", "taxid": 488438, "species_taxid": 488438, "relation_to_type": "type", "validated": true, "ani": 76.9911, "matched_fragments": 297, "total_fragments": 1295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum humicireducens", "strain": "strain=SgZ-5", "accession": "GCA_001639105.2", "taxid": 1226968, "species_taxid": 1226968, "relation_to_type": "type", "validated": true, "ani": 76.9905, "matched_fragments": 319, "total_fragments": 1295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nisaea sediminum", "strain": "strain=NBU1469", "accession": "GCA_014904705.1", "taxid": 2775867, "species_taxid": 2775867, "relation_to_type": "type", "validated": true, "ani": 76.9586, "matched_fragments": 182, "total_fragments": 1295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum melinis", "strain": "strain=TMCY0552", "accession": "GCA_013340935.1", "taxid": 328839, "species_taxid": 328839, "relation_to_type": "type", "validated": true, "ani": 76.9305, "matched_fragments": 323, "total_fragments": 1295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum melinis", "strain": "strain=TMCY 0552", "accession": "GCA_017876055.1", "taxid": 328839, "species_taxid": 328839, "relation_to_type": "type", "validated": true, "ani": 76.9272, "matched_fragments": 330, "total_fragments": 1295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum agricola", "strain": "strain=CC-HIH038", "accession": "GCA_017876095.1", "taxid": 1720247, "species_taxid": 1720247, "relation_to_type": "type", "validated": true, "ani": 76.9004, "matched_fragments": 366, "total_fragments": 1295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum palustre", "strain": "strain=B2", "accession": "GCA_002573965.1", "taxid": 2044885, "species_taxid": 2044885, "relation_to_type": "type", "validated": true, "ani": 76.8882, "matched_fragments": 344, "total_fragments": 1295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum baldaniorum", "strain": "strain=Sp245", "accession": "GCA_000237365.1", "taxid": 1064539, "species_taxid": 1064539, "relation_to_type": "type", "validated": true, "ani": 76.794, "matched_fragments": 347, "total_fragments": 1295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum baldaniorum", "strain": "strain=Sp245", "accession": "GCA_003119195.2", "taxid": 1064539, "species_taxid": 1064539, "relation_to_type": "type", "validated": true, "ani": 76.7922, "matched_fragments": 347, "total_fragments": 1295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tistlia consotensis", "strain": "strain=DSM 21585", "accession": "GCA_900188055.1", "taxid": 1321365, "species_taxid": 1321365, "relation_to_type": "type", "validated": true, "ani": 76.7834, "matched_fragments": 382, "total_fragments": 1295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum halopraeferens", "strain": "strain=DSM 3675", "accession": "GCA_000429625.1", "taxid": 34010, "species_taxid": 34010, "relation_to_type": "type", "validated": true, "ani": 76.7561, "matched_fragments": 347, "total_fragments": 1295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum soli", "strain": "strain=CC-LY788", "accession": "GCA_017876165.1", "taxid": 1304799, "species_taxid": 1304799, "relation_to_type": "type", "validated": true, "ani": 76.7442, "matched_fragments": 274, "total_fragments": 1295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nisaea acidiphila", "strain": "strain=MEBiC11861", "accession": "GCA_024662015.1", "taxid": 1862145, "species_taxid": 1862145, "relation_to_type": "type", "validated": true, "ani": 76.7014, "matched_fragments": 176, "total_fragments": 1295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovibrio sodomensis", "strain": "strain=DSM 9895", "accession": "GCA_016583645.1", "taxid": 1088, "species_taxid": 1088, "relation_to_type": "type", "validated": true, "ani": 76.6649, "matched_fragments": 236, "total_fragments": 1295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Magnetospirillum caucaseum", "strain": "strain=SO-1", "accession": "GCA_000342045.1", "taxid": 1244869, "species_taxid": 1244869, "relation_to_type": "type", "validated": true, "ani": 76.5922, "matched_fragments": 224, "total_fragments": 1295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenibaculum pallidiluteum", "strain": "strain=SYSU D00532", "accession": "GCA_017355985.1", "taxid": 2812559, "species_taxid": 2812559, "relation_to_type": "type", "validated": true, "ani": 76.5776, "matched_fragments": 273, "total_fragments": 1295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum cavernae", "strain": "strain=K2W22B-5", "accession": "GCA_003590795.1", "taxid": 2320860, "species_taxid": 2320860, "relation_to_type": "type", "validated": true, "ani": 76.5377, "matched_fragments": 212, "total_fragments": 1295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Skermanella aerolata", "strain": "strain=5416T-32", "accession": "GCA_000936425.1", "taxid": 393310, "species_taxid": 393310, "relation_to_type": "type", "validated": true, "ani": 76.5202, "matched_fragments": 292, "total_fragments": 1295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vineibacter terrae", "strain": "strain=CC-CFT640", "accession": "GCA_008039615.1", "taxid": 2586908, "species_taxid": 2586908, "relation_to_type": "type", "validated": true, "ani": 76.4687, "matched_fragments": 268, "total_fragments": 1295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium terricola", "strain": "strain=17Sr1-39", "accession": "GCA_006151805.1", "taxid": 2583531, "species_taxid": 2583531, "relation_to_type": "type", "validated": true, "ani": 76.156, "matched_fragments": 269, "total_fragments": 1295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium nonmethylotrophicum", "strain": "strain=6HR-1", "accession": "GCA_004745635.1", "taxid": 1141884, "species_taxid": 1141884, "relation_to_type": "type", "validated": true, "ani": 76.0846, "matched_fragments": 271, "total_fragments": 1295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseiarcus fermentans", "strain": "strain=DSM 24875", "accession": "GCA_003315135.1", "taxid": 1473586, "species_taxid": 1473586, "relation_to_type": "type", "validated": true, "ani": 75.9721, "matched_fragments": 190, "total_fragments": 1295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyphomicrobium denitrificans", "strain": "strain=ATCC 51888", "accession": "GCA_000143145.1", "taxid": 53399, "species_taxid": 53399, "relation_to_type": "type", "validated": true, "ani": 75.886, "matched_fragments": 59, "total_fragments": 1295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phenylobacterium aquaticum", "strain": "strain=KACC 18306", "accession": "GCA_022695515.1", "taxid": 1763816, "species_taxid": 1763816, "relation_to_type": "type", "validated": true, "ani": 75.767, "matched_fragments": 175, "total_fragments": 1295, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_009909005.1", "gtdb_species": "s__JAAAOG01 sp009909005", "ani": 100.0, "matched_fragments": 1282, "total_fragments": 1295, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__DSM-16000;f__Inquilinaceae;g__JAAAOG01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_013003675.1", "gtdb_species": "s__JABDIP01 sp013003675", "ani": 77.9486, "matched_fragments": 266, "total_fragments": 1295, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__DSM-16000;f__Inquilinaceae;g__JABDIP01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000423185.1", "gtdb_species": "s__Inquilinus 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"total_fragments": 1295, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__DSM-16000;f__Inquilinaceae;g__Inquilinus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_006969625.1", "gtdb_species": "s__Algihabitans sp006969625", "ani": 77.2827, "matched_fragments": 291, "total_fragments": 1295, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Kiloniellales;f__DSM-21159;g__Algihabitans", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003130795.1", "gtdb_species": "s__Azospirillum thermophilum", "ani": 77.1716, "matched_fragments": 348, "total_fragments": 1295, "gtdb_taxonomy": 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