{
    "type": "genome",
    "identifier": "GCA_009914975.1",
    "organism": "Spirochaetia bacterium",
    "title": "Spirochaetia bacterium",
    "description": "derived from metagenome; fragmented assembly; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "INTA",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_009914975.1",
        "bioproject": "PRJNA508305",
        "biosample": "SAMN10636232",
        "wgs_master": "SABJ00000000.1",
        "refseq_category": "na",
        "taxid": "2053615",
        "species_taxid": "2053615",
        "organism_name": "Spirochaetia bacterium",
        "infraspecific_name": "",
        "isolate": "INTA.CYC.086",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/01/22",
        "asm_name": "ASM991497v1",
        "submitter": "INTA",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/914/975/GCA_009914975.1_ASM991497v1",
        "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-01-22",
    "dateModified": "2020-01-22",
    "datePublished": "2020-01-22",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Spirochaetia bacterium"
        ],
        "sample_taxid": [
            "2053615"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Argentina: San Carlos Sur"
        ],
        "sample_host_location_id": [],
        "data_size": "1.754 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 80.21,
        "contamination": 36.57,
        "strain_heterogeneity": 25.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "6038627",
        "Number of Sequences": "2202",
        "Longest Sequences (bp)": "38691",
        "N50 (bp)": "3482",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "51.6",
        "Number of CDSs": "4148",
        "Average Protein Length": "277.3",
        "Coding Ratio (%)": "57.1",
        "Number of rRNAs": "0",
        "Number of tRNAs": "55",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Sphaerochaeta associata",
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                "accession": "GCA_022869165.1",
                "taxid": 1129264,
                "species_taxid": 1129264,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.2441,
                "matched_fragments": 201,
                "total_fragments": 918,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphaerochaeta globosa",
                "strain": "strain=Buddy",
                "accession": "GCA_000190435.1",
                "taxid": 1131703,
                "species_taxid": 1131703,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0913,
                "matched_fragments": 175,
                "total_fragments": 918,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphaerochaeta halotolerans",
                "strain": "strain=4-11",
                "accession": "GCA_003429665.1",
                "taxid": 2293840,
                "species_taxid": 2293840,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9109,
                "matched_fragments": 102,
                "total_fragments": 918,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphaerochaeta pleomorpha",
                "strain": "strain=Grapes",
                "accession": "GCA_000236685.1",
                "taxid": 1131707,
                "species_taxid": 1131707,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8349,
                "matched_fragments": 97,
                "total_fragments": 918,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 80.21,
            "contamination": 36.57,
            "strain_heterogeneity": 25.0
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        "gtdb_result": [
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                "accession": "GCA_012519125.1",
                "gtdb_species": "s__Sphaerochaeta sp012519125",
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                "total_fragments": 918,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Sphaerochaetales;f__Sphaerochaetaceae;g__Sphaerochaeta",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001603115.1",
                "gtdb_species": "s__Sphaerochaeta sp001603115",
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                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Sphaerochaetales;f__Sphaerochaetaceae;g__Sphaerochaeta",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016342655.1",
                "gtdb_species": "s__Sphaerochaeta sp016342655",
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                "matched_fragments": 475,
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                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Sphaerochaetales;f__Sphaerochaetaceae;g__Sphaerochaeta",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003446545.1",
                "gtdb_species": "s__Sphaerochaeta sp003446545",
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                "matched_fragments": 350,
                "total_fragments": 918,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Sphaerochaetales;f__Sphaerochaetaceae;g__Sphaerochaeta",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.24",
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                "mean_intra_species_af": "0.91",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_009930195.1",
                "gtdb_species": "s__Sphaerochaeta sp009930195",
                "ani": 81.3781,
                "matched_fragments": 206,
                "total_fragments": 918,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Sphaerochaetales;f__Sphaerochaetaceae;g__Sphaerochaeta",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.24",
                "min_intra_species_ani": "99.24",
                "mean_intra_species_af": "0.76",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_012838275.1",
                "gtdb_species": "s__Sphaerochaeta sp012838275",
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                "matched_fragments": 343,
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                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Sphaerochaetales;f__Sphaerochaetaceae;g__Sphaerochaeta",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_012514185.1",
                "gtdb_species": "s__Sphaerochaeta sp012514185",
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                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Sphaerochaetales;f__Sphaerochaetaceae;g__Sphaerochaeta",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002432715.1",
                "gtdb_species": "s__Sphaerochaeta sp002432715",
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                "matched_fragments": 197,
                "total_fragments": 918,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Sphaerochaetales;f__Sphaerochaetaceae;g__Sphaerochaeta",
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                "mean_intra_species_ani": "98.32",
                "min_intra_species_ani": "97.53",
                "mean_intra_species_af": "0.87",
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                "num_clustered_genomes": 11,
                "status": "-"
            },
            {
                "accession": "GCA_012511235.1",
                "gtdb_species": "s__Sphaerochaeta sp012511235",
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                "matched_fragments": 141,
                "total_fragments": 918,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Sphaerochaetales;f__Sphaerochaetaceae;g__Sphaerochaeta",
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            },
            {
                "accession": "GCF_000190435.1",
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_016406725.1",
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            },
            {
                "accession": "GCA_001603105.1",
                "gtdb_species": "s__Sphaerochaeta sp001603105",
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                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Sphaerochaetales;f__Sphaerochaetaceae;g__Sphaerochaeta",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003247345.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
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        "p__Spirochaetota",
        "c__Spirochaetia",
        "o__Sphaerochaetales",
        "f__Sphaerochaetaceae",
        "g__Sphaerochaeta",
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    ],
    "_genome_taxon": [
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        "d__Bacteria",
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        "o__Sphaerochaetales",
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        "s__Sphaerochaeta sp012519125",
        "Bacteria",
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        "Sphaerochaeta",
        "Sphaerochaeta",
        "sp012519125"
    ],
    "_meo": [
        {
            "id": "MEO_0000035",
            "label": "waste water"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}