{
    "type": "genome",
    "identifier": "GCA_009921005.1",
    "organism": "Chitinophagales bacterium",
    "title": "Chitinophagales bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Georgia Institute of Technology",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_009921005.1",
        "bioproject": "PRJNA495371",
        "biosample": "SAMN10223052",
        "wgs_master": "RFYX00000000.1",
        "refseq_category": "na",
        "taxid": "2448779",
        "species_taxid": "2448779",
        "organism_name": "Chitinophagales bacterium",
        "infraspecific_name": "",
        "isolate": "WB5_3B_035",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/01/23",
        "asm_name": "ASM992100v1",
        "submitter": "Georgia Institute of Technology",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/921/005/GCA_009921005.1_ASM992100v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-01-23",
    "dateModified": "2020-01-23",
    "datePublished": "2020-01-23",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Chitinophagales bacterium"
        ],
        "sample_taxid": [
            "2448779"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Chattahoochee River"
        ],
        "sample_host_location_id": [],
        "data_size": "0.614 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": 2428.0,
            "max": 2428.0
        },
        "completeness": 90.62,
        "contamination": 0.52,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2125619",
        "Number of Sequences": "255",
        "Longest Sequences (bp)": "136860",
        "N50 (bp)": "23310",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "48.3",
        "Number of CDSs": "1809",
        "Average Protein Length": "314.5",
        "Coding Ratio (%)": "80.3",
        "Number of rRNAs": "1",
        "Number of tRNAs": "34",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 90.62,
            "contamination": 0.52,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_003489485.1",
                "gtdb_species": "s__JJ008 sp003489485",
                "ani": 96.0877,
                "matched_fragments": 354,
                "total_fragments": 576,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__JJ008",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.38",
                "min_intra_species_ani": "96.92",
                "mean_intra_species_af": "0.79",
                "min_intra_species_af": "0.76",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCA_016872155.1",
                "gtdb_species": "s__JJ008 sp016872155",
                "ani": 79.7326,
                "matched_fragments": 336,
                "total_fragments": 576,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__JJ008",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016872195.1",
                "gtdb_species": "s__JJ008 sp016872195",
                "ani": 78.6296,
                "matched_fragments": 276,
                "total_fragments": 576,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__JJ008",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002342205.1",
                "gtdb_species": "s__JJ008 sp002342205",
                "ani": 76.7178,
                "matched_fragments": 69,
                "total_fragments": 576,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__JJ008",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.68",
                "min_intra_species_ani": "98.09",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_016868475.1",
                "gtdb_species": "s__JJ008 sp016868475",
                "ani": 76.2746,
                "matched_fragments": 55,
                "total_fragments": 576,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__JJ008",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_005789565.1",
                "gtdb_species": "s__JJ008 sp005789565",
                "ani": 76.1711,
                "matched_fragments": 50,
                "total_fragments": 576,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__JJ008",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.322,
        "cell_length": 0.364,
        "doubling_h": null,
        "growth_tmp": 30.538,
        "optimum_tmp": 29.829,
        "optimum_ph": 6.773,
        "genome_size": 5998721.602,
        "gc_content": 44.915,
        "coding_genes": 5429.047,
        "rRNA16S_genes": 3.5,
        "tRNA_genes": 54.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.225,
        "range_salinity": null,
        "facultative_respiration": 0.034,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.965,
        "mesophilic_range_tmp": 0.75,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.25,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Chitinophagales",
        "f__Chitinophagaceae",
        "g__JJ008",
        "s__JJ008 sp003489485"
    ],
    "_genome_taxon": [
        "Chitinophagales",
        "bacterium",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Chitinophagales",
        "f__Chitinophagaceae",
        "g__JJ008",
        "s__JJ008 sp003489485",
        "Bacteria",
        "Bacteroidota",
        "Bacteroidia",
        "Chitinophagales",
        "Chitinophagaceae",
        "JJ008",
        "JJ008",
        "sp003489485"
    ],
    "_meo": [
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        },
        {
            "id": "MEO_0000024",
            "label": "lake"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}