{ "type": "genome", "identifier": "GCA_009926355.1", "organism": "Betaproteobacteria bacterium", "title": "Betaproteobacteria bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Georgia Institute of Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCA_009926355.1", "bioproject": "PRJNA495371", "biosample": "SAMN10222799", "wgs_master": "RFPE00000000.1", "refseq_category": "na", "taxid": "1891241", "species_taxid": "1891241", "organism_name": "Betaproteobacteria bacterium", "infraspecific_name": "", "isolate": "WB4_5_120", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/01/23", "asm_name": "ASM992635v1", "submitter": "Georgia Institute of Technology", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/926/355/GCA_009926355.1_ASM992635v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-01-23", "dateModified": "2020-01-23", "datePublished": "2020-01-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Betaproteobacteria bacterium" ], "sample_taxid": [ "1891241" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Chattahoochee River" ], "sample_host_location_id": [], "data_size": "0.740 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 2363.0, "max": 2363.0 }, "completeness": 100.0, "contamination": 4.63, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2584570", "Number of Sequences": "313", "Longest Sequences (bp)": "65484", "N50 (bp)": "16200", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "54.3", "Number of CDSs": "2374", "Average Protein Length": "296.1", "Coding Ratio (%)": "81.6", "Number of rRNAs": "1", "Number of tRNAs": "35", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Limnohabitans curvus", "strain": "strain=MWH-C5", "accession": "GCA_003063475.1", "taxid": 323423, "species_taxid": 323423, "relation_to_type": "type", "validated": true, "ani": 77.2262, "matched_fragments": 154, "total_fragments": 695, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limnohabitans radicicola", "strain": "strain=JUR4", "accession": "GCA_014837235.1", "taxid": 2771427, "species_taxid": 2771427, "relation_to_type": "type", "validated": true, "ani": 77.2226, "matched_fragments": 138, "total_fragments": 695, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Simplicispira metamorpha", "strain": "strain=DSM 1837", "accession": "GCA_004341365.1", "taxid": 80881, "species_taxid": 80881, "relation_to_type": "type", "validated": true, "ani": 77.062, "matched_fragments": 139, "total_fragments": 695, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Simplicispira metamorpha", "strain": "strain=NBRC 13960", "accession": "GCA_003568725.1", "taxid": 80881, "species_taxid": 80881, "relation_to_type": "type", "validated": true, "ani": 77.0148, "matched_fragments": 138, "total_fragments": 695, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoferax fermentans", "strain": "strain=DSM 10138", "accession": "GCA_016583655.1", "taxid": 28066, "species_taxid": 28066, "relation_to_type": "type", "validated": true, "ani": 76.9443, "matched_fragments": 126, "total_fragments": 695, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoferax fermentans", "strain": "strain=JCM 7819", "accession": "GCA_002017865.1", "taxid": 28066, "species_taxid": 28066, "relation_to_type": "type", "validated": true, "ani": 76.915, "matched_fragments": 128, "total_fragments": 695, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoferax lacus", "strain": "strain=IMCC26218", "accession": "GCA_003415675.1", "taxid": 2184758, "species_taxid": 2184758, "relation_to_type": "type", "validated": true, "ani": 76.8926, "matched_fragments": 165, "total_fragments": 695, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limnohabitans planktonicus", "strain": "strain=II-D5", "accession": "GCA_001270065.2", "taxid": 540060, "species_taxid": 540060, "relation_to_type": "type", "validated": true, "ani": 76.8355, "matched_fragments": 169, "total_fragments": 695, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax carolinensis", "strain": "strain=NA3", "accession": "GCA_002157145.1", "taxid": 553814, "species_taxid": 553814, "relation_to_type": "type", "validated": true, "ani": 76.7788, "matched_fragments": 134, "total_fragments": 695, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas kerstersii", "strain": "strain=CCUG 15333", "accession": "GCA_008801935.1", "taxid": 225992, "species_taxid": 225992, "relation_to_type": "type", "validated": true, "ani": 76.695, "matched_fragments": 100, "total_fragments": 695, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brachymonas denitrificans", "strain": "strain=DSM 15123", "accession": "GCA_900110225.1", "taxid": 28220, "species_taxid": 28220, "relation_to_type": "type", "validated": true, "ani": 76.6743, "matched_fragments": 83, "total_fragments": 695, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax radicis", "strain": "strain=N35", "accession": "GCA_000204195.2", "taxid": 758826, "species_taxid": 758826, "relation_to_type": "type", "validated": true, "ani": 76.6454, "matched_fragments": 138, "total_fragments": 695, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Simplicispira psychrophila", "strain": "strain=DSM 11588", "accession": "GCA_000688255.1", "taxid": 80882, "species_taxid": 80882, "relation_to_type": "type", "validated": true, "ani": 76.6403, "matched_fragments": 123, "total_fragments": 695, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Extensimonas vulgaris", "strain": "strain=CGMCC 1.10977", "accession": "GCA_007830535.1", "taxid": 1031594, "species_taxid": 1031594, "relation_to_type": "type", "validated": true, "ani": 76.6256, "matched_fragments": 99, "total_fragments": 695, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas avium", "strain": "strain=Sa2CVA6", "accession": "GCA_014836675.1", "taxid": 2762231, "species_taxid": 2762231, "relation_to_type": "type", "validated": true, "ani": 76.6108, "matched_fragments": 97, "total_fragments": 695, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Extensimonas vulgaris", "strain": "strain=S4", "accession": "GCA_007996985.1", "taxid": 1031594, "species_taxid": 1031594, "relation_to_type": "type", "validated": true, "ani": 76.6006, "matched_fragments": 99, "total_fragments": 695, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaromonas eurypsychrophila", "strain": "strain=CGMCC 1.15322", "accession": "GCA_014641715.1", "taxid": 1614635, "species_taxid": 1614635, "relation_to_type": "type", "validated": true, "ani": 76.5996, "matched_fragments": 101, "total_fragments": 695, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax caeni", "strain": "strain=R-24608", "accession": "GCA_001298675.1", "taxid": 343013, "species_taxid": 343013, "relation_to_type": "type", "validated": true, "ani": 76.5771, "matched_fragments": 117, "total_fragments": 695, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax caeni", "strain": "strain=R-24608", "accession": "GCA_900116825.1", "taxid": 343013, "species_taxid": 343013, "relation_to_type": "type", "validated": true, "ani": 76.5763, "matched_fragments": 117, "total_fragments": 695, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga taeniospiralis", "strain": "strain=NBRC 102512", "accession": "GCA_001592305.1", "taxid": 65656, "species_taxid": 65656, "relation_to_type": "type", "validated": true, "ani": 76.5695, "matched_fragments": 107, "total_fragments": 695, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Extensimonas vulgaris", "strain": "strain=DSM 100911", "accession": "GCA_003337425.1", "taxid": 1031594, "species_taxid": 1031594, "relation_to_type": "type", "validated": true, "ani": 76.5678, "matched_fragments": 103, "total_fragments": 695, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Extensimonas perlucida", "strain": "strain=HX2-24", "accession": "GCA_007655255.1", "taxid": 2590786, "species_taxid": 2590786, "relation_to_type": "type", "validated": true, "ani": 76.5608, "matched_fragments": 100, "total_fragments": 695, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tepidimonas ignava", "strain": "strain=SPS-1037", "accession": "GCA_007556615.1", "taxid": 114249, "species_taxid": 114249, "relation_to_type": "type", "validated": true, "ani": 76.4971, "matched_fragments": 79, "total_fragments": 695, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas koreensis", "strain": "strain=KCTC 12005", "accession": "GCA_021026195.1", "taxid": 160825, "species_taxid": 160825, "relation_to_type": "type", "validated": true, "ani": 76.4905, "matched_fragments": 100, "total_fragments": 695, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ottowia beijingensis", "strain": "strain=GCS-AN-3", "accession": "GCA_013423955.1", "taxid": 1207057, "species_taxid": 1207057, "relation_to_type": "type", "validated": true, "ani": 76.4771, "matched_fragments": 101, "total_fragments": 695, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tepidimonas ignava", "strain": "strain=DSM 12034", "accession": "GCA_004342625.1", "taxid": 114249, "species_taxid": 114249, "relation_to_type": "type", "validated": true, "ani": 76.471, "matched_fragments": 80, "total_fragments": 695, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax cattleyae", "strain": "strain=DSM 17101", "accession": "GCA_900104515.1", "taxid": 80868, "species_taxid": 80868, "relation_to_type": "type", "validated": true, "ani": 76.0844, "matched_fragments": 101, "total_fragments": 695, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquabacterium soli", "strain": "strain=SJQ9", "accession": "GCA_003933735.1", "taxid": 2493092, "species_taxid": 2493092, "relation_to_type": "type", "validated": true, "ani": 75.8075, 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"ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014837235.1", "gtdb_species": "s__Limnohabitans_A sp014837235", "ani": 77.2416, "matched_fragments": 137, "total_fragments": 695, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Limnohabitans_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002778275.1", "gtdb_species": "s__Limnohabitans_A sp002778275", "ani": 77.2088, "matched_fragments": 161, "total_fragments": 695, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Limnohabitans_A", 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"min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013334205.1", "gtdb_species": "s__Hylemonella sp013334205", "ani": 76.9566, "matched_fragments": 146, "total_fragments": 695, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Hylemonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_005503365.1", "gtdb_species": "s__Hydrogenophaga sp005503365", "ani": 76.9457, "matched_fragments": 102, "total_fragments": 695, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Hydrogenophaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": 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