{ "type": "genome", "identifier": "GCA_009928075.1", "organism": "Betaproteobacteria bacterium", "title": "Betaproteobacteria bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Georgia Institute of Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCA_009928075.1", "bioproject": "PRJNA495371", "biosample": "SAMN10222963", "wgs_master": "RFVM00000000.1", "refseq_category": "na", "taxid": "1891241", "species_taxid": "1891241", "organism_name": "Betaproteobacteria bacterium", "infraspecific_name": "", "isolate": "WB5_3B_199", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/01/24", "asm_name": "ASM992807v1", "submitter": "Georgia Institute of Technology", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/928/075/GCA_009928075.1_ASM992807v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-01-24", "dateModified": "2020-01-24", "datePublished": "2020-01-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Betaproteobacteria bacterium" ], "sample_taxid": [ "1891241" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Chattahoochee River" ], "sample_host_location_id": [], "data_size": "0.563 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 1098.0, "max": 1098.0 }, "completeness": 88.74, "contamination": 0.52, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1984065", "Number of Sequences": "521", "Longest Sequences (bp)": "31999", "N50 (bp)": "5850", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.3", "Number of CDSs": "1744", "Average Protein Length": "253.7", "Coding Ratio (%)": "66.9", "Number of rRNAs": "0", "Number of tRNAs": "34", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Thauera phenylacetica", "strain": "strain=B4P", "accession": "GCA_000310225.1", "taxid": 164400, "species_taxid": 164400, "relation_to_type": "type", "validated": true, "ani": 77.785, "matched_fragments": 88, "total_fragments": 393, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfurisoma sediminicola", "strain": "strain=DSM 26916", "accession": "GCA_003663955.1", "taxid": 1381557, "species_taxid": 1381557, "relation_to_type": "type", "validated": true, "ani": 77.6395, "matched_fragments": 75, "total_fragments": 393, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfurisoma sediminicola", "strain": "strain=BSN1", "accession": "GCA_003865015.1", "taxid": 1381557, "species_taxid": 1381557, "relation_to_type": "type", "validated": true, "ani": 77.6189, "matched_fragments": 74, "total_fragments": 393, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera aminoaromatica", "strain": "strain=S2", "accession": "GCA_000310185.1", "taxid": 164330, "species_taxid": 164330, "relation_to_type": "type", "validated": true, "ani": 77.371, "matched_fragments": 81, "total_fragments": 393, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodocyclus purpureus", "strain": "strain=DSM 168", "accession": "GCA_016653115.1", "taxid": 1067, "species_taxid": 1067, "relation_to_type": "type", "validated": true, "ani": 77.3212, "matched_fragments": 85, "total_fragments": 393, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aromatoleum tolulyticum", "strain": "strain=ATCC 51758", "accession": "GCA_900156155.1", "taxid": 34027, "species_taxid": 34027, "relation_to_type": "type", "validated": true, "ani": 77.2403, "matched_fragments": 63, "total_fragments": 393, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodocyclus tenuis", "strain": "strain=2761", "accession": "GCA_014197755.1", "taxid": 1066, "species_taxid": 1066, "relation_to_type": "type", "validated": true, "ani": 77.1315, "matched_fragments": 80, "total_fragments": 393, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodocyclus tenuis", "strain": "strain=2761", "accession": "GCA_009469755.1", "taxid": 1066, "species_taxid": 1066, "relation_to_type": "type", "validated": true, "ani": 77.0653, "matched_fragments": 78, "total_fragments": 393, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera chlorobenzoica", "strain": "strain=3CB-1", "accession": "GCA_900108255.1", "taxid": 96773, "species_taxid": 96773, "relation_to_type": "type", "validated": true, "ani": 77.0259, "matched_fragments": 80, "total_fragments": 393, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera chlorobenzoica", "strain": "strain=3CB1", "accession": "GCA_001922305.1", "taxid": 96773, "species_taxid": 96773, "relation_to_type": "type", "validated": true, "ani": 76.9939, "matched_fragments": 81, "total_fragments": 393, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azoarcus rhizosphaerae", "strain": "strain=CC-YHH848", "accession": "GCA_004801305.1", "taxid": 2565932, "species_taxid": 2565932, "relation_to_type": "type", "validated": true, "ani": 76.9533, "matched_fragments": 79, "total_fragments": 393, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chromobacterium sinusclupearum", "strain": "strain=MWU13-2610", "accession": "GCA_002902845.1", "taxid": 2077146, "species_taxid": 2077146, "relation_to_type": "type", "validated": true, "ani": 76.8174, "matched_fragments": 62, "total_fragments": 393, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chromobacterium amazonense", "strain": "strain=DSM 26508", "accession": "GCA_001855565.1", "taxid": 1382803, "species_taxid": 1382803, "relation_to_type": "type", "validated": true, "ani": 76.7612, "matched_fragments": 62, "total_fragments": 393, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chromobacterium aquaticum", "strain": "strain=DSM 19852", "accession": "GCA_021129195.1", "taxid": 467180, "species_taxid": 467180, "relation_to_type": "type", "validated": true, "ani": 76.7594, "matched_fragments": 59, "total_fragments": 393, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zoogloea ramigera", "strain": "strain=NBRC 15342", "accession": "GCA_006539865.1", "taxid": 350, "species_taxid": 350, "relation_to_type": "type", "validated": true, "ani": 76.7483, "matched_fragments": 80, "total_fragments": 393, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azoarcus nasutitermitis", "strain": "strain=CC-YHH838", "accession": "GCA_004801295.1", "taxid": 2565930, "species_taxid": 2565930, "relation_to_type": "type", "validated": true, "ani": 76.668, "matched_fragments": 81, "total_fragments": 393, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chromobacterium alkanivorans", "strain": "strain=IITR-71", "accession": "GCA_016937655.1", "taxid": 1071719, "species_taxid": 1071719, "relation_to_type": "type", "validated": true, "ani": 76.6427, "matched_fragments": 69, "total_fragments": 393, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aromatoleum toluvorans", "strain": "strain=Td21", "accession": "GCA_012910905.1", "taxid": 92002, "species_taxid": 92002, "relation_to_type": "type", "validated": true, "ani": 76.5814, "matched_fragments": 80, "total_fragments": 393, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vogesella alkaliphila", "strain": "strain=KCTC 32041", "accession": "GCA_014652475.1", "taxid": 1193621, "species_taxid": 1193621, "relation_to_type": "type", "validated": true, "ani": 76.4886, "matched_fragments": 67, "total_fragments": 393, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia perseverans", "strain": "strain=INN12", "accession": "GCA_022870505.1", "taxid": 2615214, "species_taxid": 2615214, "relation_to_type": "type", "validated": true, "ani": 76.2677, "matched_fragments": 57, "total_fragments": 393, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 88.74, "contamination": 0.52, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_009927815.1", "gtdb_species": "s__UBA3065 sp002367415", "ani": 99.0598, "matched_fragments": 298, "total_fragments": 393, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__UBA3065;g__UBA3065", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.03", "min_intra_species_ani": "98.97", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.74", "num_clustered_genomes": 6, "status": "conclusive" }, { "accession": "GCA_018882975.1", "gtdb_species": "s__UBA3065 sp018882975", "ani": 81.3426, "matched_fragments": 220, "total_fragments": 393, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__UBA3065;g__UBA3065", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_009923755.1", "gtdb_species": "s__UBA3065 sp009923755", "ani": 81.0553, "matched_fragments": 203, "total_fragments": 393, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__UBA3065;g__UBA3065", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016858125.1", "gtdb_species": "s__Azospira_A restricta", "ani": 77.9357, "matched_fragments": 91, "total_fragments": 393, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Azospira_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000012745.1", "gtdb_species": "s__Thiobacillus denitrificans_B", "ani": 77.6293, "matched_fragments": 70, "total_fragments": 393, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Thiobacillaceae;g__Thiobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003446655.1", "gtdb_species": "s__Thauera sp003446655", "ani": 77.5185, "matched_fragments": 54, "total_fragments": 393, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Thauera", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.50", "min_intra_species_ani": "99.50", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_016183655.1", "gtdb_species": "s__Azospira_A sp016183655", "ani": 77.3714, "matched_fragments": 87, "total_fragments": 393, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Azospira_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016653115.1", "gtdb_species": "s__Rhodocyclus purpureus", "ani": 77.3212, "matched_fragments": 85, "total_fragments": 393, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Rhodocyclus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016720425.1", "gtdb_species": "s__CAIWHR01 sp016720425", "ani": 77.1771, "matched_fragments": 80, "total_fragments": 393, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Casimicrobiaceae;g__CAIWHR01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.60", "min_intra_species_ani": "97.38", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.90", "num_clustered_genomes": 10, "status": "-" }, { "accession": "GCF_004337445.1", "gtdb_species": "s__Parasulfuritortus cantonensis", "ani": 76.9456, "matched_fragments": 65, "total_fragments": 393, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Thiobacillaceae;g__Parasulfuritortus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009469595.1", "gtdb_species": "s__Thauera sp009469595", "ani": 76.8151, "matched_fragments": 81, "total_fragments": 393, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Thauera", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003628555.1", "gtdb_species": "s__Aromatoleum sp003628555", "ani": 76.6282, "matched_fragments": 79, "total_fragments": 393, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Aromatoleum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017302295.1", "gtdb_species": "s__Thauera sp017302295", "ani": 76.5518, "matched_fragments": 79, "total_fragments": 393, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Thauera", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018240785.1", "gtdb_species": "s__Thauera sp018240785", "ani": 76.5228, "matched_fragments": 79, "total_fragments": 393, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Thauera", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Burkholderiales", "f__UBA3065", "g__UBA3065", "s__UBA3065 sp002367415" ], "_genome_taxon": [ "Betaproteobacteria", "bacterium", "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Burkholderiales", "f__UBA3065", "g__UBA3065", "s__UBA3065 sp002367415", "Bacteria", "Pseudomonadota", "Gammaproteobacteria", "Burkholderiales", "UBA3065", "UBA3065", "UBA3065", "sp002367415" ], "_meo": [ { "id": "MEO_0000038", "label": "freshwater" }, { "id": "MEO_0000024", "label": "lake" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }