{
    "type": "genome",
    "identifier": "GCA_009936995.1",
    "organism": "Rhodobacterales bacterium",
    "title": "Rhodobacterales bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Ocean University of China",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_009936995.1",
        "bioproject": "PRJNA428417",
        "biosample": "SAMN13828876",
        "wgs_master": "JAACDH000000000.1",
        "refseq_category": "na",
        "taxid": "1948890",
        "species_taxid": "1948890",
        "organism_name": "Rhodobacterales bacterium",
        "infraspecific_name": "",
        "isolate": "HS5BWF_bin.2",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/01/27",
        "asm_name": "ASM993699v1",
        "submitter": "Ocean University of China",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/936/995/GCA_009936995.1_ASM993699v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-01-27",
    "dateModified": "2020-01-27",
    "datePublished": "2020-01-27",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Rhodobacterales bacterium"
        ],
        "sample_taxid": [
            "1948890"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Pacific Ocean"
        ],
        "sample_host_location_id": [],
        "data_size": "1.600 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 76.42,
        "contamination": 14.7,
        "strain_heterogeneity": 13.33,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "5596993",
        "Number of Sequences": "724",
        "Longest Sequences (bp)": "48200",
        "N50 (bp)": "10273",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "61.7",
        "Number of CDSs": "4233",
        "Average Protein Length": "326.2",
        "Coding Ratio (%)": "74.0",
        "Number of rRNAs": "0",
        "Number of tRNAs": "47",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Streptomyces spectabilis",
                "strain": "strain=KCTC9218",
                "accession": "GCA_022698305.1",
                "taxid": 68270,
                "species_taxid": 68270,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.6734,
                "matched_fragments": 58,
                "total_fragments": 1488,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces spectabilis",
                "strain": "strain=JCM 4308",
                "accession": "GCA_014649235.1",
                "taxid": 68270,
                "species_taxid": 68270,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.6708,
                "matched_fragments": 59,
                "total_fragments": 1488,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces spectabilis",
                "strain": "strain=CECT 3146",
                "accession": "GCA_014203475.1",
                "taxid": 68270,
                "species_taxid": 68270,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.666,
                "matched_fragments": 60,
                "total_fragments": 1488,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces spectabilis",
                "strain": "strain=ATCC 27465",
                "accession": "GCA_008704795.1",
                "taxid": 68270,
                "species_taxid": 68270,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.6629,
                "matched_fragments": 60,
                "total_fragments": 1488,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 14.7,
            "strain_heterogeneity": 13.33
        },
        "gtdb_result": [
            {
                "accession": "GCA_009936995.1",
                "gtdb_species": "s__JAACDH01 sp009936995",
                "ani": 100.0,
                "matched_fragments": 1462,
                "total_fragments": 1488,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota_A;c__UBA796;o__UBA796;f__GCA-2862545;g__JAACDH01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_006226595.1",
                "gtdb_species": "s__M1803 sp006226595",
                "ani": 76.0266,
                "matched_fragments": 144,
                "total_fragments": 1488,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota_A;c__UBA796;o__UBA796;f__GCA-2862545;g__M1803",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002862545.1",
                "gtdb_species": "s__GCA-2862545 sp002862545",
                "ani": 75.7313,
                "matched_fragments": 105,
                "total_fragments": 1488,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota_A;c__UBA796;o__UBA796;f__GCA-2862545;g__GCA-2862545",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_007693595.1",
                "gtdb_species": "s__REDI01 sp007693595",
                "ani": 75.6514,
                "matched_fragments": 57,
                "total_fragments": 1488,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota_A;c__UBA796;o__UBA796;f__GCA-2862545;g__REDI01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016938035.1",
                "gtdb_species": "s__JAFGVK01 sp016938035",
                "ani": 75.6292,
                "matched_fragments": 61,
                "total_fragments": 1488,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota_A;c__UBA796;o__UBA796;f__GCA-2862545;g__JAFGVK01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018401435.1",
                "gtdb_species": "s__M30B51 sp018401435",
                "ani": 75.4558,
                "matched_fragments": 83,
                "total_fragments": 1488,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota_A;c__UBA796;o__UBA796;f__UBA2385;g__M30B51",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903921785.1",
                "gtdb_species": "s__SXON01 sp903921785",
                "ani": 75.2741,
                "matched_fragments": 75,
                "total_fragments": 1488,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota_A;c__UBA796;o__UBA796;f__SXON01;g__SXON01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.91",
                "min_intra_species_ani": "99.91",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_008704795.1",
                "gtdb_species": "s__Streptomyces spectabilis",
                "ani": 74.6645,
                "matched_fragments": 59,
                "total_fragments": 1488,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.73",
                "min_intra_species_ani": "96.21",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 4,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.197,
        "cell_length": 0.193,
        "doubling_h": 0.42,
        "growth_tmp": 28.265,
        "optimum_tmp": 28.878,
        "optimum_ph": 7.446,
        "genome_size": 4160747.54,
        "gc_content": 62.69,
        "coding_genes": 4005.416,
        "rRNA16S_genes": 2.751,
        "tRNA_genes": 48.894,
        "gram_stain": 0.003,
        "sporulation": 0.014,
        "motility": 0.422,
        "range_salinity": 0.916,
        "facultative_respiration": 0.083,
        "anaerobic_respiration": 0.046,
        "aerobic_respiration": 0.869,
        "mesophilic_range_tmp": 0.928,
        "thermophilic_range_tmp": 0.035,
        "psychrophilic_range_tmp": 0.035,
        "bacillus_cell_shape": 0.849,
        "coccus_cell_shape": 0.042,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.107,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Myxococcota",
        "c__UBA796",
        "o__UBA796",
        "f__GCA-2862545",
        "g__JAACDH01",
        "s__JAACDH01 sp009936995"
    ],
    "_genome_taxon": [
        "Rhodobacterales",
        "bacterium",
        "d__Bacteria",
        "p__Myxococcota",
        "c__UBA796",
        "o__UBA796",
        "f__GCA-2862545",
        "g__JAACDH01",
        "s__JAACDH01 sp009936995",
        "Bacteria",
        "Myxococcota",
        "UBA796",
        "UBA796",
        "GCA-2862545",
        "JAACDH01",
        "JAACDH01",
        "sp009936995"
    ],
    "_meo": [
        {
            "id": "MEO_0000041",
            "label": "marine water"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}