{ "type": "genome", "identifier": "GCA_010672865.1", "organism": "Kamptonema sp. SIO1D9", "title": "Kamptonema sp. SIO1D9", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "UCSD", "publication": [ {} ], "properties": { "assembly_accession": "GCA_010672865.1", "bioproject": "PRJNA558979", "biosample": "SAMN12797961", "wgs_master": "JAAHFS000000000.1", "refseq_category": "na", "taxid": "2607808", "species_taxid": "2607808", "organism_name": "Kamptonema sp. SIO1D9", "infraspecific_name": "", "isolate": "SIO1D9", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/02/16", "asm_name": "ASM1067286v1", "submitter": "UCSD", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/010/672/865/GCA_010672865.1_ASM1067286v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-02-16", "dateModified": "2020-02-16", "datePublished": "2020-02-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Kamptonema sp. SIO1D9" ], "sample_taxid": [ "2607808" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.738 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.46, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "6162206", "Number of Sequences": "331", "Longest Sequences (bp)": "304374", "N50 (bp)": "35746", "Gap Ratio (%)": "0.047077", "GCcontent (%)": "41.3", "Number of CDSs": "4968", "Average Protein Length": "329.7", "Coding Ratio (%)": "79.7", "Number of rRNAs": "2", "Number of tRNAs": "55", "Number of CRISPRs": "16" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Crocosphaera watsonii", "strain": "strain=WH 8501", "accession": 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