{
    "type": "genome",
    "identifier": "GCA_011040105.1",
    "organism": "Actinomycetota bacterium",
    "title": "Actinomycetota bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "The University of Hong Kong",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_011040105.1",
        "bioproject": "PRJNA480137",
        "biosample": "SAMN09638447",
        "wgs_master": "DRDD00000000.1",
        "refseq_category": "na",
        "taxid": "2900548",
        "species_taxid": "2900548",
        "organism_name": "Actinomycetota bacterium",
        "infraspecific_name": "",
        "isolate": "HyVt-267",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/02/28",
        "asm_name": "ASM1104010v1",
        "submitter": "The University of Hong Kong",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/040/105/GCA_011040105.1_ASM1104010v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-02-28",
    "dateModified": "2020-02-28",
    "datePublished": "2020-02-28",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Actinomycetia bacterium"
        ],
        "sample_taxid": [
            "1883427"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Pacific Ocean:Southern Mariana Trough"
        ],
        "sample_host_location_id": [],
        "data_size": "0.830 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 8.85,
        "strain_heterogeneity": 33.33,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2952861",
        "Number of Sequences": "344",
        "Longest Sequences (bp)": "42541",
        "N50 (bp)": "12183",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "63.3",
        "Number of CDSs": "2649",
        "Average Protein Length": "289.5",
        "Coding Ratio (%)": "77.9",
        "Number of rRNAs": "1",
        "Number of tRNAs": "43",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Actinoplanes deccanensis",
                "strain": "strain=NBRC 13994",
                "accession": "GCA_016862115.1",
                "taxid": 113561,
                "species_taxid": 113561,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.7451,
                "matched_fragments": 59,
                "total_fragments": 818,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 8.85,
            "strain_heterogeneity": 33.33
        },
        "gtdb_result": [
            {
                "accession": "GCA_002897675.1",
                "gtdb_species": "s__BMS3Bbin01 sp002897675",
                "ani": 99.1587,
                "matched_fragments": 578,
                "total_fragments": 818,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__UBA5794;f__UBA4744;g__BMS3Bbin01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.34",
                "min_intra_species_ani": "99.19",
                "mean_intra_species_af": "0.80",
                "min_intra_species_af": "0.71",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCA_013152275.1",
                "gtdb_species": "s__BMS3Bbin01 sp013152275",
                "ani": 87.6525,
                "matched_fragments": 572,
                "total_fragments": 818,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__UBA5794;f__UBA4744;g__BMS3Bbin01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_011682695.1",
                "gtdb_species": "s__BMS3Bbin01 sp011682695",
                "ani": 87.0725,
                "matched_fragments": 481,
                "total_fragments": 818,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__UBA5794;f__UBA4744;g__BMS3Bbin01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_015488325.1",
                "gtdb_species": "s__S012-128 sp015488325",
                "ani": 76.8149,
                "matched_fragments": 62,
                "total_fragments": 818,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__UBA5794;f__S012-128;g__S012-128",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.25",
                "min_intra_species_ani": "99.12",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_002403855.1",
                "gtdb_species": "s__UBA4744 sp002403855",
                "ani": 76.2363,
                "matched_fragments": 68,
                "total_fragments": 818,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__UBA5794;f__UBA4744;g__UBA4744",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017577575.1",
                "gtdb_species": "s__ZC4RG17 sp017577575",
                "ani": 75.8881,
                "matched_fragments": 51,
                "total_fragments": 818,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__UBA5794;f__ZC4RG35;g__ZC4RG17",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Actinomycetota",
        "c__Acidimicrobiia",
        "o__UBA5794",
        "f__UBA4744",
        "g__BMS3Bbin01",
        "s__BMS3Bbin01 sp002897675"
    ],
    "_genome_taxon": [
        "Actinomycetota",
        "bacterium",
        "d__Bacteria",
        "p__Actinomycetota",
        "c__Acidimicrobiia",
        "o__UBA5794",
        "f__UBA4744",
        "g__BMS3Bbin01",
        "s__BMS3Bbin01 sp002897675",
        "Bacteria",
        "Actinomycetota",
        "Acidimicrobiia",
        "UBA5794",
        "UBA4744",
        "BMS3Bbin01",
        "BMS3Bbin01",
        "sp002897675"
    ],
    "_meo": [
        {
            "id": "MEO_0000686",
            "label": "hydrothermal sediment"
        },
        {
            "id": "MEO_0000031",
            "label": "hydrothermal vent"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}