{
    "type": "genome",
    "identifier": "GCA_011043825.1",
    "organism": "Thermoplasmatales archaeon",
    "title": "Thermoplasmatales archaeon",
    "description": "derived from metagenome; fragmented assembly; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "The University of Hong Kong",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_011043825.1",
        "bioproject": "PRJNA480137",
        "biosample": "SAMN09638407",
        "wgs_master": "DRBP00000000.1",
        "refseq_category": "na",
        "taxid": "2268204",
        "species_taxid": "2268204",
        "organism_name": "Thermoplasmatales archaeon",
        "infraspecific_name": "",
        "isolate": "HyVt-230",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/03/01",
        "asm_name": "ASM1104382v1",
        "submitter": "The University of Hong Kong",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/043/825/GCA_011043825.1_ASM1104382v1",
        "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-03-01",
    "dateModified": "2020-03-01",
    "datePublished": "2020-03-01",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Thermoplasmatales archaeon"
        ],
        "sample_taxid": [
            "2268204"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Mexico: Guaymas Basin, Gulf of California"
        ],
        "sample_host_location_id": [],
        "data_size": "0.226 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 71.88,
        "contamination": 8.25,
        "strain_heterogeneity": 58.33,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "788256",
        "Number of Sequences": "222",
        "Longest Sequences (bp)": "11552",
        "N50 (bp)": "4003",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "46.7",
        "Number of CDSs": "658",
        "Average Protein Length": "255.9",
        "Coding Ratio (%)": "64.1",
        "Number of rRNAs": "0",
        "Number of tRNAs": "29",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 71.88,
            "contamination": 8.25,
            "strain_heterogeneity": 58.33
        },
        "gtdb_result": [
            {
                "accession": "GCA_003651105.1",
                "gtdb_species": "s__B18-G2 sp003651105",
                "ani": 96.8915,
                "matched_fragments": 86,
                "total_fragments": 137,
                "gtdb_taxonomy": "d__Archaea;p__Thermoplasmatota;c__E2;o__DHVEG-1;f__B18-G2;g__B18-G2",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": 1.02,
        "growth_tmp": 52.964,
        "optimum_tmp": 53.125,
        "optimum_ph": 2.125,
        "genome_size": 1624976.52,
        "gc_content": 42.63,
        "coding_genes": 1626.166,
        "rRNA16S_genes": 1.0,
        "tRNA_genes": 45.3,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 1.0,
        "facultative_respiration": 0.428,
        "anaerobic_respiration": 0.142,
        "aerobic_respiration": 0.428,
        "mesophilic_range_tmp": 0.333,
        "thermophilic_range_tmp": 0.666,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Archaea",
        "p__Thermoplasmatota",
        "c__E2",
        "o__DHVEG-1",
        "f__B18-G2",
        "g__B18-G2",
        "s__B18-G2 sp003651105"
    ],
    "_genome_taxon": [
        "Thermoplasmatales",
        "archaeon",
        "d__Archaea",
        "p__Thermoplasmatota",
        "c__E2",
        "o__DHVEG-1",
        "f__B18-G2",
        "g__B18-G2",
        "s__B18-G2 sp003651105",
        "Archaea",
        "Thermoplasmatota",
        "E2",
        "DHVEG-1",
        "B18-G2",
        "B18-G2",
        "B18-G2",
        "sp003651105"
    ],
    "_meo": [
        {
            "id": "MEO_0000686",
            "label": "hydrothermal sediment"
        },
        {
            "id": "MEO_0000023",
            "label": "sea"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}