{ "type": "genome", "identifier": "GCA_011049455.1", "organism": "Desulfonatronum sp.", "title": "Desulfonatronum sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "The University of Hong Kong", "publication": [ {} ], "properties": { "assembly_accession": "GCA_011049455.1", "bioproject": "PRJNA480137", "biosample": "SAMN09639086", "wgs_master": "DSBL00000000.1", "refseq_category": "na", "taxid": "1963255", "species_taxid": "1963255", "organism_name": "Desulfonatronum sp.", "infraspecific_name": "", "isolate": "SpSt-1171", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/03/02", "asm_name": "ASM1104945v1", "submitter": "The University of Hong Kong", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/049/455/GCA_011049455.1_ASM1104945v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-03-02", "dateModified": "2020-03-02", "datePublished": "2020-03-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Desulfonatronum sp." ], "sample_taxid": [ "1963255" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: California" ], "sample_host_location_id": [], "data_size": "0.816 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 87.5, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2874005", "Number of Sequences": "164", "Longest Sequences (bp)": "90991", "N50 (bp)": "31355", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "57.1", "Number of CDSs": "2552", "Average Protein Length": "321.1", "Coding Ratio (%)": "85.5", "Number of rRNAs": "0", "Number of tRNAs": "42", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Desulfonatronum thiodismutans", "strain": "strain=MLF-1", "accession": "GCA_000717475.2", "taxid": 159290, "species_taxid": 159290, "relation_to_type": "type", "validated": true, "ani": 78.7659, "matched_fragments": 343, "total_fragments": 870, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfonatronum lacustre", "strain": "strain=DSM 10312", "accession": "GCA_000519265.1", "taxid": 66849, "species_taxid": 66849, "relation_to_type": "type", "validated": true, "ani": 78.4597, "matched_fragments": 347, "total_fragments": 870, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfonatronum thioautotrophicum", "strain": "strain=ASO4-1", "accession": "GCA_000934745.1", "taxid": 617001, "species_taxid": 617001, "relation_to_type": "type", "validated": true, "ani": 78.0704, "matched_fragments": 264, "total_fragments": 870, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfonatronum thiosulfatophilum", "strain": "strain=ASO4-2", "accession": "GCA_900104215.1", "taxid": 617002, "species_taxid": 617002, "relation_to_type": "type", "validated": true, "ani": 77.7052, "matched_fragments": 272, "total_fragments": 870, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfovibrio sulfodismutans", "strain": "strain=DSM 3696", "accession": "GCA_013376455.1", "taxid": 63561, "species_taxid": 63561, "relation_to_type": "type", "validated": true, "ani": 76.5007, "matched_fragments": 107, "total_fragments": 870, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfovibrio sulfodismutans", "strain": "strain=DSM 3696", "accession": "GCA_010499425.1", "taxid": 63561, "species_taxid": 63561, "relation_to_type": "type", "validated": true, "ani": 76.4753, "matched_fragments": 105, "total_fragments": 870, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudodesulfovibrio mercurii", "strain": "strain=ND132", "accession": "GCA_000189295.2", "taxid": 641491, "species_taxid": 641491, "relation_to_type": "type", "validated": true, "ani": 76.469, "matched_fragments": 75, "total_fragments": 870, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudodesulfovibrio indicus", "strain": "strain=J2", "accession": "GCA_001563225.1", "taxid": 1716143, "species_taxid": 1716143, "relation_to_type": "type", "validated": true, "ani": 76.4576, "matched_fragments": 81, "total_fragments": 870, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfohalovibrio alkalitolerans", "strain": "strain=DSM 16529", "accession": "GCA_000422245.1", "taxid": 293256, "species_taxid": 293256, "relation_to_type": "type", "validated": true, "ani": 76.3683, "matched_fragments": 77, "total_fragments": 870, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfomicrobium orale", "strain": "strain=DSM 12838", "accession": "GCA_001553625.1", "taxid": 132132, "species_taxid": 132132, "relation_to_type": "type", "validated": true, "ani": 76.2546, "matched_fragments": 62, "total_fragments": 870, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Solidesulfovibrio alcoholivorans", "strain": "strain=DSM 5433", "accession": "GCA_000702665.1", "taxid": 81406, "species_taxid": 81406, "relation_to_type": "type", "validated": true, "ani": 76.1384, "matched_fragments": 96, "total_fragments": 870, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Solidesulfovibrio carbinolicus", "strain": "strain=DSM 3852", "accession": "GCA_004135975.1", "taxid": 296842, "species_taxid": 296842, "relation_to_type": "type", "validated": true, "ani": 75.9547, "matched_fragments": 88, "total_fragments": 870, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Solidesulfovibrio magneticus", "strain": "strain=RS-1", "accession": "GCA_000010665.1", "taxid": 184917, "species_taxid": 184917, "relation_to_type": "type", "validated": true, "ani": 75.7291, "matched_fragments": 107, "total_fragments": 870, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 87.5, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_011049455.1", "gtdb_species": "s__Desulfonatronum sp011049455", "ani": 100.0, "matched_fragments": 864, "total_fragments": 870, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfonatronaceae;g__Desulfonatronum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" 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