{ "type": "genome", "identifier": "GCA_011050015.1", "organism": "Leeuwenhoekiella sp.", "title": "Leeuwenhoekiella sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "The University of Hong Kong", "publication": [ {} ], "properties": { "assembly_accession": "GCA_011050015.1", "bioproject": "PRJNA480137", "biosample": "SAMN09638538", "wgs_master": "DRGP00000000.1", "refseq_category": "na", "taxid": "1977054", "species_taxid": "1977054", "organism_name": "Leeuwenhoekiella sp.", "infraspecific_name": "", "isolate": "HyVt-349", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/03/02", "asm_name": "ASM1105001v1", "submitter": "The University of Hong Kong", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/050/015/GCA_011050015.1_ASM1105001v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-03-02", "dateModified": "2020-03-02", "datePublished": "2020-03-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Leeuwenhoekiella sp." ], "sample_taxid": [ "1977054" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Arctic Ocean: Gakkel Ridge" ], "sample_host_location_id": [], "data_size": "1.055 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 34.26, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3690286", "Number of Sequences": "261", "Longest Sequences (bp)": "112319", "N50 (bp)": "20145", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "40.7", "Number of CDSs": "2954", "Average Protein Length": "333.4", "Coding Ratio (%)": "80.1", "Number of rRNAs": "0", "Number of tRNAs": "24", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Leeuwenhoekiella aequorea", "strain": "strain=LMG 22550", "accession": "GCA_004104375.1", "taxid": 283736, "species_taxid": 283736, "relation_to_type": "type", "validated": true, "ani": 80.0612, "matched_fragments": 99, "total_fragments": 1094, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leeuwenhoekiella marinoflava", "strain": "strain=DSM 3653", "accession": "GCA_900129005.1", "taxid": 988, "species_taxid": 988, "relation_to_type": "type", "validated": true, "ani": 79.4079, "matched_fragments": 124, "total_fragments": 1094, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leeuwenhoekiella palythoae", "strain": "strain=DSM 19859", "accession": "GCA_900130045.1", 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