{ "type": "genome", "identifier": "GCA_011050445.1", "organism": "Pseudoalteromonas sp.", "title": "Pseudoalteromonas sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "The University of Hong Kong", "publication": [ {} ], "properties": { "assembly_accession": "GCA_011050445.1", "bioproject": "PRJNA480137", "biosample": "SAMN09638514", "wgs_master": "DRFR00000000.1", "refseq_category": "na", "taxid": "53249", "species_taxid": "53249", "organism_name": "Pseudoalteromonas sp.", "infraspecific_name": "", "isolate": "HyVt-327", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/03/02", "asm_name": "ASM1105044v1", "submitter": "The University of Hong Kong", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/050/445/GCA_011050445.1_ASM1105044v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-03-02", "dateModified": "2020-03-02", "datePublished": "2020-03-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudoalteromonas sp." ], "sample_taxid": [ "53249" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Arctic Ocean: Gakkel Ridge" ], "sample_host_location_id": [], "data_size": "1.276 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 83.33, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4480376", "Number of Sequences": "177", "Longest Sequences (bp)": "112695", "N50 (bp)": "40686", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "39.0", "Number of CDSs": "3888", "Average Protein Length": "325.2", "Coding Ratio (%)": "84.7", "Number of rRNAs": "4", "Number of tRNAs": "77", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudoalteromonas arctica", "strain": "strain=A 37-1-2", "accession": "GCA_000238395.4", "taxid": 394751, "species_taxid": 394751, "relation_to_type": "type", "validated": true, "ani": 94.4616, "matched_fragments": 1206, "total_fragments": 1402, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas distincta", "strain": "strain=ATCC 700518", "accession": "GCA_000814675.1", "taxid": 77608, "species_taxid": 77608, "relation_to_type": "type", "validated": true, "ani": 93.1782, "matched_fragments": 1207, "total_fragments": 1402, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas fuliginea", "strain": "strain=KMM 216", "accession": "GCA_000690055.1", "taxid": 1872678, "species_taxid": 1872678, "relation_to_type": "type", "validated": true, "ani": 89.9541, "matched_fragments": 1052, "total_fragments": 1402, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas aliena", "strain": "strain=SW19", "accession": "GCA_014905615.1", "taxid": 247523, "species_taxid": 247523, "relation_to_type": "type", "validated": true, "ani": 87.2785, "matched_fragments": 943, "total_fragments": 1402, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas carrageenovora", "strain": "strain=IAM 12662", "accession": "GCA_014925295.1", "taxid": 227, "species_taxid": 227, "relation_to_type": "type", "validated": true, "ani": 85.2905, "matched_fragments": 1073, "total_fragments": 1402, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas carrageenovora", "strain": "strain=NBRC 12985", "accession": "GCA_006539245.1", "taxid": 227, "species_taxid": 227, "relation_to_type": "type", "validated": true, "ani": 85.2578, "matched_fragments": 1021, "total_fragments": 1402, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas carrageenovora", "strain": "strain=ATCC 43555", "accession": "GCA_900239935.1", "taxid": 227, "species_taxid": 227, "relation_to_type": "type", "validated": true, "ani": 85.22, "matched_fragments": 1074, "total_fragments": 1402, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas espejiana", "strain": "strain=NBRC 102222", "accession": "GCA_007989585.1", "taxid": 28107, "species_taxid": 28107, "relation_to_type": "type", "validated": true, "ani": 83.2594, "matched_fragments": 965, "total_fragments": 1402, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas nigrifaciens", "strain": "strain=NCTC10691", "accession": "GCA_900455185.1", "taxid": 28109, "species_taxid": 28109, "relation_to_type": "type", "validated": true, "ani": 82.9249, "matched_fragments": 839, "total_fragments": 1402, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas translucida", "strain": "strain=KMM 520", "accession": "GCA_001465295.1", "taxid": 166935, "species_taxid": 166935, "relation_to_type": "type", "validated": true, "ani": 82.5313, "matched_fragments": 813, "total_fragments": 1402, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas tetraodonis", "strain": "strain=GFC", "accession": "GCA_002310835.1", "taxid": 43659, "species_taxid": 43659, "relation_to_type": "suspected-type", "validated": true, "ani": 81.514, "matched_fragments": 731, "total_fragments": 1402, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas rhizosphaerae", "strain": "strain=RA15", "accession": "GCA_902498845.1", "taxid": 2518973, "species_taxid": 2518973, "relation_to_type": "type", "validated": true, "ani": 80.1962, "matched_fragments": 592, "total_fragments": 1402, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas galatheae", "strain": "strain=S4498", "accession": "GCA_005886105.2", "taxid": 579562, "species_taxid": 579562, "relation_to_type": "type", "validated": true, "ani": 77.6294, "matched_fragments": 180, "total_fragments": 1402, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella vesiculosa", "strain": "strain=M7", "accession": "GCA_021560015.1", "taxid": 518738, "species_taxid": 518738, "relation_to_type": "type", "validated": true, "ani": 75.892, "matched_fragments": 61, "total_fragments": 1402, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 83.33, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001974875.1", "gtdb_species": "s__Pseudoalteromonas sp001974875", "ani": 97.1628, "matched_fragments": 1205, 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