{ "type": "genome", "identifier": "GCA_011050885.1", "organism": "Halieaceae bacterium", "title": "Halieaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "The University of Hong Kong", "publication": [ {} ], "properties": { "assembly_accession": "GCA_011050885.1", "bioproject": "PRJNA480137", "biosample": "SAMN09638495", "wgs_master": "DREY00000000.1", "refseq_category": "na", "taxid": "2026743", "species_taxid": "2026743", "organism_name": "Halieaceae bacterium", "infraspecific_name": "", "isolate": "HyVt-31", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/03/02", "asm_name": "ASM1105088v1", "submitter": "The University of Hong Kong", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/050/885/GCA_011050885.1_ASM1105088v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-03-02", "dateModified": "2020-03-02", "datePublished": "2020-03-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Halieaceae bacterium" ], "sample_taxid": [ "2026743" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Mexico: Guaymas Basin, Gulf of California" ], "sample_host_location_id": [], "data_size": "0.775 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 66.76, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2687850", "Number of Sequences": "492", "Longest Sequences (bp)": "23126", "N50 (bp)": "6168", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "56.0", "Number of CDSs": "2169", "Average Protein Length": "286.6", "Coding Ratio (%)": "69.4", "Number of rRNAs": "0", "Number of tRNAs": "22", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Parahaliea mediterranea", "strain": "strain=DSM 21924", "accession": "GCA_003402235.1", "taxid": 651086, "species_taxid": 651086, "relation_to_type": "type", "validated": true, "ani": 77.8735, "matched_fragments": 132, "total_fragments": 656, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Parahaliea aestuarii", "strain": "strain=S2-26", "accession": "GCA_008064635.1", "taxid": 1852021, "species_taxid": 1852021, "relation_to_type": "type", "validated": true, "ani": 77.4924, "matched_fragments": 134, "total_fragments": 656, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Seongchinamella unica", "strain": "strain=GH4-78", "accession": "GCA_004354085.1", "taxid": 2547392, "species_taxid": 2547392, "relation_to_type": "type", "validated": true, "ani": 77.4768, "matched_fragments": 131, "total_fragments": 656, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Seongchinamella sediminis", "strain": "strain=U0301", "accession": "GCA_003457605.1", "taxid": 2283635, "species_taxid": 2283635, "relation_to_type": "type", "validated": true, "ani": 77.3123, "matched_fragments": 155, "total_fragments": 656, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Parahaliea maris", "strain": "strain=HSLHS9", "accession": "GCA_008064665.1", "taxid": 2716870, "species_taxid": 2716870, "relation_to_type": "type", "validated": true, "ani": 77.2924, "matched_fragments": 137, "total_fragments": 656, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kineobactrum salinum", "strain": "strain=M2", "accession": "GCA_010669285.1", "taxid": 2708301, "species_taxid": 2708301, "relation_to_type": "type", "validated": true, "ani": 77.0929, "matched_fragments": 101, "total_fragments": 656, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halioglobus japonicus", "strain": "strain=NBRC 107739", "accession": "GCA_001983995.1", "taxid": 930805, "species_taxid": 930805, "relation_to_type": "type", "validated": true, "ani": 76.8886, "matched_fragments": 101, "total_fragments": 656, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudohalioglobus lutimaris", "strain": "strain=HF004", "accession": "GCA_002866825.1", "taxid": 1737061, "species_taxid": 1737061, "relation_to_type": "type", "validated": true, "ani": 76.7165, "matched_fragments": 84, "total_fragments": 656, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sediminihaliea albiluteola", "strain": "strain=F7430", "accession": "GCA_014077625.1", "taxid": 2758564, "species_taxid": 2758564, "relation_to_type": "type", "validated": true, "ani": 76.6762, "matched_fragments": 55, "total_fragments": 656, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kineobactrum sediminis", "strain": "strain=F02", "accession": "GCA_002868715.1", "taxid": 1905677, "species_taxid": 1905677, "relation_to_type": "type", "validated": true, "ani": 76.4211, "matched_fragments": 91, "total_fragments": 656, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 66.76, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_003646415.1", "gtdb_species": "s__Halioglobus sp003646415", "ani": 98.9266, "matched_fragments": 476, "total_fragments": 656, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Halioglobus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": 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