{ "type": "genome", "identifier": "GCA_011053075.1", "organism": "Halopseudomonas xinjiangensis", "title": "Halopseudomonas xinjiangensis", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "The University of Hong Kong", "publication": [ {} ], "properties": { "assembly_accession": "GCA_011053075.1", "bioproject": "PRJNA480137", "biosample": "SAMN09638564", "wgs_master": "DRHP00000000.1", "refseq_category": "na", "taxid": "487184", "species_taxid": "487184", "organism_name": "Halopseudomonas xinjiangensis", "infraspecific_name": "", "isolate": "HyVt-372", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/03/02", "asm_name": "ASM1105307v1", "submitter": "The University of Hong Kong", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/053/075/GCA_011053075.1_ASM1105307v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-03-02", "dateModified": "2020-03-02", "datePublished": "2020-03-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Halopseudomonas xinjiangensis" ], "sample_taxid": [ "487184" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Arctic Ocean: Gakkel Ridge" ], "sample_host_location_id": [], "data_size": "1.108 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 83.33, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3876563", "Number of Sequences": "88", "Longest Sequences (bp)": "286932", "N50 (bp)": "74365", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "57.5", "Number of CDSs": "3544", "Average Protein Length": "319.8", "Coding Ratio (%)": "87.7", "Number of rRNAs": "0", "Number of tRNAs": "40", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas profundi", "strain": "strain=M5", "accession": "GCA_008638305.1", "taxid": 1981513, "species_taxid": 1981513, "relation_to_type": "type", "validated": true, "ani": 80.0331, "matched_fragments": 418, "total_fragments": 1248, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas saliphila", "strain": "strain=16W4-4-3", "accession": "GCA_008638345.1", "taxid": 2586906, "species_taxid": 2586906, "relation_to_type": "type", "validated": true, "ani": 79.9731, "matched_fragments": 420, "total_fragments": 1248, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halopseudomonas litoralis", "strain": "strain=2SM5", "accession": "GCA_900105005.1", "taxid": 797277, "species_taxid": 797277, "relation_to_type": "type", "validated": true, "ani": 79.3222, "matched_fragments": 332, "total_fragments": 1248, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halopseudomonas bauzanensis", "strain": "strain=DSM 22558", "accession": "GCA_900111225.1", "taxid": 653930, "species_taxid": 653930, "relation_to_type": "type", "validated": true, "ani": 78.9384, "matched_fragments": 348, "total_fragments": 1248, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halopseudomonas bauzanensis", "strain": "strain=CGMCC 1.9095", "accession": "GCA_900114735.1", "taxid": 653930, "species_taxid": 653930, "relation_to_type": "type", "validated": true, "ani": 78.8749, "matched_fragments": 346, "total_fragments": 1248, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halopseudomonas salina", "strain": "strain=CGMCC 1.12482", "accession": "GCA_014637955.1", "taxid": 1323744, 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"type", "validated": true, "ani": 77.987, "matched_fragments": 350, "total_fragments": 1248, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halopseudomonas pachastrellae", "strain": "strain=CCUG 46540", "accession": "GCA_001989375.1", "taxid": 254161, "species_taxid": 254161, "relation_to_type": "type", "validated": true, "ani": 77.9455, "matched_fragments": 341, "total_fragments": 1248, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas yangmingensis", "strain": "strain=DSM 24213", "accession": "GCA_900114825.1", "taxid": 1720063, "species_taxid": 1720063, "relation_to_type": "type", "validated": true, "ani": 77.9317, "matched_fragments": 265, "total_fragments": 1248, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas kunmingensis", "strain": "strain=DSM 25974", "accession": "GCA_900114065.1", "taxid": 1211807, "species_taxid": 1211807, "relation_to_type": "type", "validated": true, "ani": 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