{
    "type": "genome",
    "identifier": "GCA_011087905.1",
    "organism": "Synechococcales cyanobacterium MH2_Bin29",
    "title": "Synechococcales cyanobacterium MH2_Bin29",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "ETH Zurich",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_011087905.1",
        "bioproject": "PRJNA603662",
        "biosample": "SAMN14054237",
        "wgs_master": "JAALKT000000000.1",
        "refseq_category": "na",
        "taxid": "2716164",
        "species_taxid": "2716164",
        "organism_name": "Synechococcales cyanobacterium MH2_Bin29",
        "infraspecific_name": "",
        "isolate": "MH2_Bin29",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/03/09",
        "asm_name": "ASM1108790v1",
        "submitter": "ETH Zurich",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/087/905/GCA_011087905.1_ASM1108790v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-03-09",
    "dateModified": "2020-03-09",
    "datePublished": "2020-03-09",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Synechococcales cyanobacterium MH2_Bin29"
        ],
        "sample_taxid": [
            "2716164"
        ],
        "sample_host_organism": [
            "Mycale hentscheli"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "New Zealand"
        ],
        "sample_host_location_id": [],
        "data_size": "0.580 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 94.44,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2021302",
        "Number of Sequences": "133",
        "Longest Sequences (bp)": "90737",
        "N50 (bp)": "20249",
        "Gap Ratio (%)": "0.133033",
        "GCcontent (%)": "55.7",
        "Number of CDSs": "1984",
        "Average Protein Length": "278.9",
        "Coding Ratio (%)": "82.1",
        "Number of rRNAs": "0",
        "Number of tRNAs": "35",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Parasynechococcus marenigrum",
                "strain": "strain=WH 8102",
                "accession": "GCA_000195975.1",
                "taxid": 2881428,
                "species_taxid": 2881428,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0713,
                "matched_fragments": 124,
                "total_fragments": 609,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 94.44,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000230675.1",
                "gtdb_species": "s__Synechococcus_C sp000230675",
                "ani": 97.7938,
                "matched_fragments": 573,
                "total_fragments": 609,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__Synechococcus_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.29",
                "min_intra_species_ani": "95.09",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 8,
                "status": "conclusive"
            },
            {
                "accession": "GCF_014279775.1",
                "gtdb_species": "s__Synechococcus_C sp002500205",
                "ani": 88.019,
                "matched_fragments": 500,
                "total_fragments": 609,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__Synechococcus_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.03",
                "min_intra_species_ani": "97.76",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCF_014279835.1",
                "gtdb_species": "s__Synechococcus_C sp014279835",
                "ani": 87.5963,
                "matched_fragments": 519,
                "total_fragments": 609,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__Synechococcus_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.93",
                "min_intra_species_ani": "96.36",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_001040845.1",
                "gtdb_species": "s__Synechococcus_C sp001040845",
                "ani": 86.8901,
                "matched_fragments": 511,
                "total_fragments": 609,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__Synechococcus_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000014585.1",
                "gtdb_species": "s__Synechococcus_C sp000014585",
                "ani": 86.8744,
                "matched_fragments": 522,
                "total_fragments": 609,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__Synechococcus_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003210315.1",
                "gtdb_species": "s__Synechococcus_C sp003210315",
                "ani": 86.553,
                "matched_fragments": 330,
                "total_fragments": 609,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__Synechococcus_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.13",
                "min_intra_species_ani": "96.13",
                "mean_intra_species_af": "0.52",
                "min_intra_species_af": "0.52",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_003210755.1",
                "gtdb_species": "s__Synechococcus_C sp003210755",
                "ani": 80.3678,
                "matched_fragments": 326,
                "total_fragments": 609,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__Synechococcus_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.42",
                "min_intra_species_ani": "98.23",
                "mean_intra_species_af": "0.77",
                "min_intra_species_af": "0.74",
                "num_clustered_genomes": 4,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": 1.581,
        "growth_tmp": 22.65,
        "optimum_tmp": 32.5,
        "optimum_ph": null,
        "genome_size": 6225259.383,
        "gc_content": 53.816,
        "coding_genes": 5699.416,
        "rRNA16S_genes": 2.444,
        "tRNA_genes": 59.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Cyanobacteriota",
        "c__Cyanobacteriia",
        "o__PCC-6307",
        "f__Cyanobiaceae",
        "g__Synechococcus_C",
        "s__Synechococcus_C sp000230675"
    ],
    "_genome_taxon": [
        "Synechococcales",
        "cyanobacterium",
        "MH2_Bin29",
        "d__Bacteria",
        "p__Cyanobacteriota",
        "c__Cyanobacteriia",
        "o__PCC-6307",
        "f__Cyanobiaceae",
        "g__Synechococcus_C",
        "s__Synechococcus_C sp000230675",
        "Bacteria",
        "Cyanobacteriota",
        "Cyanobacteriia",
        "PCC-6307",
        "Cyanobiaceae",
        "Synechococcus",
        "C",
        "Synechococcus",
        "C",
        "sp000230675"
    ],
    "_meo": [
        {
            "id": "MEO_0002677",
            "label": "sponge"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}