{ "type": "genome", "identifier": "GCA_011330545.1", "organism": "Flavobacteriia bacterium", "title": "Flavobacteriia bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "The University of Hong Kong", "publication": [ {} ], "properties": { "assembly_accession": "GCA_011330545.1", "bioproject": "PRJNA480137", "biosample": "SAMN09638793", "wgs_master": "DRQI00000000.1", "refseq_category": "na", "taxid": "2044941", "species_taxid": "2044941", "organism_name": "Flavobacteriia bacterium", "infraspecific_name": "", "isolate": "HyVt-579", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/03/16", "asm_name": "ASM1133054v1", "submitter": "The University of Hong Kong", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/330/545/GCA_011330545.1_ASM1133054v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-03-16", "dateModified": "2020-03-16", "datePublished": "2020-03-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacteriia bacterium" ], "sample_taxid": [ "2044941" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Tonga: Lau Basin" ], "sample_host_location_id": [], "data_size": "0.885 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 87.5, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3130675", "Number of Sequences": "544", "Longest Sequences (bp)": "31884", "N50 (bp)": "6539", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "35.5", "Number of CDSs": "2320", "Average Protein Length": "307.1", "Coding Ratio (%)": "68.3", "Number of rRNAs": "2", "Number of tRNAs": "28", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aureibaculum flavum", "strain": "strain=A20", "accession": "GCA_016406085.1", "taxid": 2795986, "species_taxid": 2795986, "relation_to_type": "type", "validated": true, "ani": 76.763, "matched_fragments": 120, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aureibaculum luteum", "strain": "strain=SM1352", "accession": "GCA_003449015.1", "taxid": 1548456, "species_taxid": 1548456, "relation_to_type": "type", "validated": true, "ani": 76.7578, "matched_fragments": 116, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aureibaculum marinum", "strain": "strain=BH-SD17", "accession": "GCA_003813905.1", "taxid": 2487930, "species_taxid": 2487930, "relation_to_type": "type", "validated": true, "ani": 76.6442, "matched_fragments": 108, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aureibaculum algae", "strain": "strain=10Alg 115", "accession": "GCA_006065315.1", "taxid": 2584122, "species_taxid": 2584122, "relation_to_type": "type", "validated": true, "ani": 76.5881, "matched_fragments": 124, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lutibacter profundi", "strain": "strain=LP1", "accession": "GCA_001543325.1", "taxid": 1622118, "species_taxid": 1622118, "relation_to_type": "type", "validated": true, "ani": 76.1383, "matched_fragments": 89, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter cellanae", "strain": "strain=SM13", "accession": "GCA_017569185.1", "taxid": 2818493, "species_taxid": 2818493, "relation_to_type": "type", "validated": true, "ani": 75.847, "matched_fragments": 51, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum todarodis", "strain": "strain=LPB0136", "accession": "GCA_001889045.1", "taxid": 1850252, "species_taxid": 1850252, "relation_to_type": "type", "validated": true, "ani": 75.8457, "matched_fragments": 50, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter aquimarinus", "strain": "strain=ZY113", "accession": "GCA_003129485.1", "taxid": 2100726, "species_taxid": 2100726, "relation_to_type": "type", "validated": true, "ani": 75.8077, "matched_fragments": 58, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter batillariae", "strain": "strain=G4M1", "accession": "GCA_017498485.1", "taxid": 2808900, "species_taxid": 2808900, "relation_to_type": "type", "validated": true, "ani": 75.7257, "matched_fragments": 61, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter porphyrae", "strain": "strain=LMG 26671", "accession": "GCA_020532745.1", "taxid": 1137780, "species_taxid": 1137780, "relation_to_type": "type", "validated": true, "ani": 75.6738, "matched_fragments": 58, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter porphyrae", "strain": "strain=NBRC 108759", "accession": "GCA_002954685.1", "taxid": 1137780, "species_taxid": 1137780, "relation_to_type": "type", "validated": true, "ani": 75.6733, "matched_fragments": 58, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum haliotis", "strain": "strain=KCTC 52419", "accession": "GCA_025215075.1", "taxid": 1888914, "species_taxid": 1888914, "relation_to_type": "type", "validated": true, "ani": 75.5621, "matched_fragments": 54, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter aestuariivivens", "strain": "strain=DBTF-3", "accession": "GCA_005885675.1", "taxid": 2304626, "species_taxid": 2304626, "relation_to_type": "type", "validated": true, "ani": 75.4402, "matched_fragments": 65, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 87.5, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_011330545.1", "gtdb_species": "s__Aureibaculum sp011330545", "ani": 100.0, "matched_fragments": 756, "total_fragments": 770, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Aureibaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_003511845.1", "gtdb_species": "s__Aureibaculum sp003511845", "ani": 77.406, "matched_fragments": 110, "total_fragments": 770, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Aureibaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.43", "min_intra_species_ani": "99.43", "mean_intra_species_af": "0.80", "min_intra_species_af": "0.80", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_002352665.1", "gtdb_species": "s__Aureibaculum sp002352665", "ani": 76.9413, "matched_fragments": 169, "total_fragments": 770, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Aureibaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016406085.1", "gtdb_species": "s__Aureibaculum sp016406085", "ani": 76.763, "matched_fragments": 120, "total_fragments": 770, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Aureibaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003449015.1", "gtdb_species": "s__Aureibaculum sp003449015", "ani": 76.7389, "matched_fragments": 117, "total_fragments": 770, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Aureibaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003813905.1", "gtdb_species": "s__Aureibaculum marinum", "ani": 76.6237, "matched_fragments": 109, "total_fragments": 770, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Aureibaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_006065315.1", "gtdb_species": "s__Aureibaculum sp006065315", "ani": 76.5881, "matched_fragments": 124, "total_fragments": 770, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Aureibaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001543325.1", "gtdb_species": "s__Lutibacter profundi", "ani": 76.1703, "matched_fragments": 87, "total_fragments": 770, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Lutibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900188235.1", "gtdb_species": "s__Lutibacter agarilyticus", "ani": 75.9907, "matched_fragments": 69, "total_fragments": 770, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Lutibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013041805.1", "gtdb_species": "s__Lutibacter sp013041805", "ani": 75.9029, "matched_fragments": 60, "total_fragments": 770, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Lutibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_017569185.1", "gtdb_species": "s__Polaribacter sp017569185", "ani": 75.847, "matched_fragments": 51, "total_fragments": 770, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Polaribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003129485.1", "gtdb_species": "s__Polaribacter sp003129485", "ani": 75.8077, "matched_fragments": 58, "total_fragments": 770, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Polaribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900188355.1", "gtdb_species": "s__Lutibacter flavus", "ani": 75.766, "matched_fragments": 78, "total_fragments": 770, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Lutibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016858305.2", "gtdb_species": "s__Polaribacter sp016858305", "ani": 75.6001, "matched_fragments": 72, "total_fragments": 770, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Polaribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Flavobacteriales", "f__Flavobacteriaceae", "g__Aureibaculum", "s__Aureibaculum sp011330545" ], "_genome_taxon": [ "Flavobacteriia", "bacterium", "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Flavobacteriales", "f__Flavobacteriaceae", "g__Aureibaculum", "s__Aureibaculum sp011330545", "Bacteria", "Bacteroidota", "Bacteroidia", "Flavobacteriales", "Flavobacteriaceae", "Aureibaculum", "Aureibaculum", "sp011330545" ], "_meo": [ { "id": "MEO_0000686", "label": "hydrothermal sediment" }, { "id": "MEO_0000031", "label": "hydrothermal vent" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }