{ "type": "genome", "identifier": "GCA_011332085.1", "organism": "Flavobacteriia bacterium", "title": "Flavobacteriia bacterium", "description": "derived from metagenome; fragmented assembly; genus undefined", "data type": "Genome sequencing and assembly", "organization": "The University of Hong Kong", "publication": [ {} ], "properties": { "assembly_accession": "GCA_011332085.1", "bioproject": "PRJNA480137", "biosample": "SAMN09638814", "wgs_master": "DRRD00000000.1", "refseq_category": "na", "taxid": "2044941", "species_taxid": "2044941", "organism_name": "Flavobacteriia bacterium", "infraspecific_name": "", "isolate": "HyVt-598", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/03/16", "asm_name": "ASM1133208v1", "submitter": "The University of Hong Kong", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/332/085/GCA_011332085.1_ASM1133208v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-03-16", "dateModified": "2020-03-16", "datePublished": "2020-03-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacteriia bacterium" ], "sample_taxid": [ "2044941" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Taiwan" ], "sample_host_location_id": [], "data_size": "0.453 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 70.83, "contamination": 6.83, "strain_heterogeneity": 60.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1628626", "Number of Sequences": "398", "Longest Sequences (bp)": "11691", "N50 (bp)": "4140", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "29.9", "Number of CDSs": "1156", "Average Protein Length": "296.1", "Coding Ratio (%)": "63.1", "Number of rRNAs": "1", "Number of tRNAs": "26", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Polaribacter pectinis", "strain": "strain=L12M9", "accession": "GCA_014352875.1", "taxid": 2738844, "species_taxid": 2738844, "relation_to_type": "type", "validated": true, "ani": 76.9283, "matched_fragments": 65, "total_fragments": 342, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lutibacter flavus", "strain": "strain=DSM 27993", "accession": "GCA_900188355.1", "taxid": 691689, "species_taxid": 691689, "relation_to_type": "type", "validated": true, "ani": 76.8624, "matched_fragments": 52, "total_fragments": 342, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lutibacter profundi", "strain": "strain=LP1", "accession": "GCA_001543325.1", "taxid": 1622118, "species_taxid": 1622118, "relation_to_type": "type", "validated": true, "ani": 76.7306, "matched_fragments": 60, "total_fragments": 342, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter atrinae", "strain": "strain=KACC 17473", "accession": "GCA_001640115.1", "taxid": 1333662, "species_taxid": 1333662, "relation_to_type": "type", "validated": true, "ani": 76.6997, "matched_fragments": 57, "total_fragments": 342, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter butkevichii", "strain": "strain=KCTC 12100", "accession": "GCA_002954605.1", "taxid": 218490, "species_taxid": 218490, "relation_to_type": "type", "validated": true, "ani": 76.6592, "matched_fragments": 53, "total_fragments": 342, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter cellanae", "strain": "strain=SM13", "accession": "GCA_017569185.1", "taxid": 2818493, "species_taxid": 2818493, "relation_to_type": "type", "validated": true, "ani": 76.6357, "matched_fragments": 54, "total_fragments": 342, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter filamentus", "strain": "strain=ATCC 700397", "accession": "GCA_002943715.1", "taxid": 53483, "species_taxid": 53483, "relation_to_type": "type", "validated": true, "ani": 76.5962, "matched_fragments": 53, "total_fragments": 342, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter reichenbachii", "strain": "strain=KCTC 23969", "accession": "GCA_001680875.1", "taxid": 996801, "species_taxid": 996801, "relation_to_type": "type", "validated": true, "ani": 76.534, "matched_fragments": 65, "total_fragments": 342, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter porphyrae", "strain": "strain=NBRC 108759", "accession": "GCA_002954685.1", "taxid": 1137780, "species_taxid": 1137780, "relation_to_type": "type", "validated": true, "ani": 76.2701, "matched_fragments": 62, "total_fragments": 342, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter porphyrae", "strain": "strain=LMG 26671", "accession": "GCA_020532745.1", "taxid": 1137780, "species_taxid": 1137780, "relation_to_type": "type", "validated": true, "ani": 76.2573, "matched_fragments": 61, "total_fragments": 342, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter reichenbachii", "strain": "strain=KCTC 23969", "accession": "GCA_002814055.1", "taxid": 996801, "species_taxid": 996801, "relation_to_type": "type", "validated": true, "ani": 76.2422, "matched_fragments": 66, "total_fragments": 342, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aureibaculum marinum", "strain": "strain=BH-SD17", "accession": "GCA_003813905.1", "taxid": 2487930, "species_taxid": 2487930, "relation_to_type": "type", "validated": true, "ani": 76.2409, "matched_fragments": 68, "total_fragments": 342, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aureivirga marina", "strain": "strain=LMG 26721", "accession": "GCA_015767265.1", "taxid": 1182451, "species_taxid": 1182451, "relation_to_type": "type", "validated": true, "ani": 76.1249, "matched_fragments": 54, "total_fragments": 342, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 70.83, "contamination": 6.83, "strain_heterogeneity": 60.0 }, "gtdb_result": [ { "accession": "GCF_014352875.1", "gtdb_species": "s__Polaribacter sp014352875", "ani": 76.9283, "matched_fragments": 65, "total_fragments": 342, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Polaribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002163835.1", "gtdb_species": "s__Polaribacter sp002163835", "ani": 76.9113, "matched_fragments": 50, "total_fragments": 342, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Polaribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_019263805.1", "gtdb_species": "s__Polaribacter sp011379025", "ani": 76.9103, "matched_fragments": 52, "total_fragments": 342, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Polaribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.52", "min_intra_species_ani": "98.52", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900188355.1", "gtdb_species": "s__Lutibacter flavus", "ani": 76.8624, "matched_fragments": 52, "total_fragments": 342, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Lutibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000687935.1", "gtdb_species": "s__Polaribacter sp000687935", "ani": 76.7972, "matched_fragments": 58, "total_fragments": 342, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Polaribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004121075.1", "gtdb_species": "s__Lutibacter sp004121075", "ani": 76.7901, "matched_fragments": 65, "total_fragments": 342, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Lutibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001640115.1", "gtdb_species": "s__Polaribacter atrinae", "ani": 76.7415, "matched_fragments": 56, "total_fragments": 342, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Polaribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_015488935.1", "gtdb_species": "s__S010-17 sp015488935", "ani": 76.6924, "matched_fragments": 66, "total_fragments": 342, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__S010-17", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017569185.1", "gtdb_species": "s__Polaribacter sp017569185", "ani": 76.6357, "matched_fragments": 54, "total_fragments": 342, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Polaribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002163675.1", "gtdb_species": "s__Polaribacter sp002163675", "ani": 76.6149, "matched_fragments": 61, "total_fragments": 342, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Polaribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_006065315.1", "gtdb_species": "s__Aureibaculum sp006065315", "ani": 76.5973, "matched_fragments": 57, "total_fragments": 342, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Aureibaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900105985.1", "gtdb_species": "s__Tenacibaculum sp900105985", "ani": 76.5269, "matched_fragments": 56, "total_fragments": 342, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Tenacibaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.69", "min_intra_species_ani": "98.69", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_007997075.1", "gtdb_species": "s__Polaribacter sp007997075", "ani": 76.4449, "matched_fragments": 52, "total_fragments": 342, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Polaribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003813905.1", "gtdb_species": "s__Aureibaculum marinum", "ani": 76.2409, "matched_fragments": 68, "total_fragments": 342, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Aureibaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_015767265.1", "gtdb_species": "s__Aureivirga marina", "ani": 76.1548, "matched_fragments": 53, "total_fragments": 342, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Aureivirga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013041805.1", "gtdb_species": "s__Lutibacter sp013041805", "ani": 76.04, "matched_fragments": 53, "total_fragments": 342, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Lutibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_015767245.1", "gtdb_species": "s__Aureivirga sp015767245", "ani": 76.0154, "matched_fragments": 51, "total_fragments": 342, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Aureivirga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Flavobacteriales", "f__Flavobacteriaceae", "g__S010-17", "s__" ], "_genome_taxon": [ "Flavobacteriia", "bacterium", "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Flavobacteriales", "f__Flavobacteriaceae", "g__S010-17", "s__", "Bacteria", "Bacteroidota", "Bacteroidia", "Flavobacteriales", "Flavobacteriaceae", "S010-17", "s", "", "" ], "_meo": [ { "id": "MEO_0000686", "label": "hydrothermal sediment" }, { "id": "MEO_0000031", "label": "hydrothermal vent" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }