{
    "type": "genome",
    "identifier": "GCA_011375175.1",
    "organism": "Deltaproteobacteria bacterium",
    "title": "Deltaproteobacteria bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "The University of Hong Kong",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_011375175.1",
        "bioproject": "PRJNA480137",
        "biosample": "SAMN09638684",
        "wgs_master": "DRME00000000.1",
        "refseq_category": "na",
        "taxid": "2026735",
        "species_taxid": "2026735",
        "organism_name": "Deltaproteobacteria bacterium",
        "infraspecific_name": "",
        "isolate": "HyVt-480",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/03/16",
        "asm_name": "ASM1137517v1",
        "submitter": "The University of Hong Kong",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/375/175/GCA_011375175.1_ASM1137517v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-03-16",
    "dateModified": "2020-03-16",
    "datePublished": "2020-03-16",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Deltaproteobacteria bacterium"
        ],
        "sample_taxid": [
            "2026735"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Tonga: Lau Basin"
        ],
        "sample_host_location_id": [],
        "data_size": "0.687 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2493163",
        "Number of Sequences": "138",
        "Longest Sequences (bp)": "105250",
        "N50 (bp)": "25886",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "64.5",
        "Number of CDSs": "2128",
        "Average Protein Length": "331.6",
        "Coding Ratio (%)": "84.9",
        "Number of rRNAs": "0",
        "Number of tRNAs": "40",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Inmirania thermothiophila",
                "strain": "strain=DSM 100275",
                "accession": "GCA_003751635.1",
                "taxid": 1750597,
                "species_taxid": 1750597,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.6343,
                "matched_fragments": 82,
                "total_fragments": 759,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Deferrisoma camini",
                "strain": "strain=S3R1",
                "accession": "GCA_000526155.1",
                "taxid": 1035120,
                "species_taxid": 1035120,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.5219,
                "matched_fragments": 57,
                "total_fragments": 759,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacterium jeotgali",
                "strain": "strain=LMG 23639",
                "accession": "GCA_022179345.1",
                "taxid": 381630,
                "species_taxid": 381630,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.0932,
                "matched_fragments": 58,
                "total_fragments": 759,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Plesiocystis pacifica",
                "strain": "strain=SIR-1",
                "accession": "GCA_000170895.1",
                "taxid": 191768,
                "species_taxid": 191768,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9992,
                "matched_fragments": 105,
                "total_fragments": 759,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_011375175.1",
                "gtdb_species": "s__DRME01 sp011375175",
                "ani": 100.0,
                "matched_fragments": 753,
                "total_fragments": 759,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__GWC2-55-46;o__GWC2-55-46;f__DRME01;g__DRME01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_016219015.1",
                "gtdb_species": "s__JACRCL01 sp016219015",
                "ani": 76.7956,
                "matched_fragments": 116,
                "total_fragments": 759,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__GWC2-55-46;o__GWC2-55-46;f__GWC2-55-46;g__JACRCL01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002418185.1",
                "gtdb_species": "s__UBA5799 sp002418185",
                "ani": 76.7161,
                "matched_fragments": 115,
                "total_fragments": 759,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__GWC2-55-46;o__GWC2-55-46;f__GWC2-55-46;g__UBA5799",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001795535.1",
                "gtdb_species": "s__GWA2-54-12 sp001795535",
                "ani": 76.5411,
                "matched_fragments": 53,
                "total_fragments": 759,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__GWC2-55-46;o__GWC2-55-46;f__GWC2-55-46;g__GWA2-54-12",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_015075075.1",
                "gtdb_species": "s__UBA5799 sp015075075",
                "ani": 76.5322,
                "matched_fragments": 95,
                "total_fragments": 759,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__GWC2-55-46;o__GWC2-55-46;f__GWC2-55-46;g__UBA5799",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016219115.1",
                "gtdb_species": "s__JACRCH01 sp016219115",
                "ani": 76.4553,
                "matched_fragments": 82,
                "total_fragments": 759,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__GWC2-55-46;o__GWC2-55-46;f__GWC2-55-46;g__JACRCH01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001797415.1",
                "gtdb_species": "s__UBA5799 sp001797415",
                "ani": 76.2844,
                "matched_fragments": 75,
                "total_fragments": 759,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__GWC2-55-46;o__GWC2-55-46;f__GWC2-55-46;g__UBA5799",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001595385.3",
                "gtdb_species": "s__UBA5799 sp001595385",
                "ani": 76.2366,
                "matched_fragments": 92,
                "total_fragments": 759,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__GWC2-55-46;o__GWC2-55-46;f__GWC2-55-46;g__UBA5799",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.97",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_016219025.1",
                "gtdb_species": "s__JACRNO01 sp016219025",
                "ani": 76.1759,
                "matched_fragments": 87,
                "total_fragments": 759,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__GWC2-55-46;o__GWC2-55-46;f__GWC2-55-46;g__JACRNO01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016219105.1",
                "gtdb_species": "s__JACRCI01 sp016219105",
                "ani": 75.9755,
                "matched_fragments": 68,
                "total_fragments": 759,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__GWC2-55-46;o__GWC2-55-46;f__DRQE01;g__JACRCI01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013177795.1",
                "gtdb_species": "s__UBA2192 sp013177795",
                "ani": 75.8924,
                "matched_fragments": 50,
                "total_fragments": 759,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Syntrophia;o__Syntrophales;f__UBA4778;g__UBA2192",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903874275.1",
                "gtdb_species": "s__CAIOAK01 sp903874275",
                "ani": 75.3956,
                "matched_fragments": 69,
                "total_fragments": 759,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Anaeromyxobacteraceae;g__CAIOAK01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.83",
                "min_intra_species_ani": "99.81",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_011328735.1",
                "gtdb_species": "s__SpSt-501 sp011328735",
                "ani": 75.1646,
                "matched_fragments": 61,
                "total_fragments": 759,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__UBA2174_A;g__SpSt-501",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Desulfobacterota",
        "c__GWC2-55-46",
        "o__GWC2-55-46",
        "f__DRME01",
        "g__DRME01",
        "s__DRME01 sp011375175"
    ],
    "_genome_taxon": [
        "Deltaproteobacteria",
        "bacterium",
        "d__Bacteria",
        "p__Desulfobacterota",
        "c__GWC2-55-46",
        "o__GWC2-55-46",
        "f__DRME01",
        "g__DRME01",
        "s__DRME01 sp011375175",
        "Bacteria",
        "Desulfobacterota",
        "GWC2-55-46",
        "GWC2-55-46",
        "DRME01",
        "DRME01",
        "DRME01",
        "sp011375175"
    ],
    "_meo": [
        {
            "id": "MEO_0000686",
            "label": "hydrothermal sediment"
        },
        {
            "id": "MEO_0000031",
            "label": "hydrothermal vent"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}