{ "type": "genome", "identifier": "GCA_011375345.1", "organism": "Gammaproteobacteria bacterium", "title": "Gammaproteobacteria bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "The University of Hong Kong", "publication": [ {} ], "properties": { "assembly_accession": "GCA_011375345.1", "bioproject": "PRJNA480137", "biosample": "SAMN09638666", "wgs_master": "DRLM00000000.1", "refseq_category": "na", "taxid": "1913989", "species_taxid": "1913989", "organism_name": "Gammaproteobacteria bacterium", "infraspecific_name": "", "isolate": "HyVt-464", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/03/16", "asm_name": "ASM1137534v1", "submitter": "The University of Hong Kong", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/375/345/GCA_011375345.1_ASM1137534v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-03-16", "dateModified": "2020-03-16", "datePublished": "2020-03-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Gammaproteobacteria bacterium" ], "sample_taxid": [ "1913989" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Tonga: Lau Basin" ], "sample_host_location_id": [], "data_size": "0.754 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 2.08, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2680143", "Number of Sequences": "162", "Longest Sequences (bp)": "66695", "N50 (bp)": "24153", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.2", "Number of CDSs": "2320", "Average Protein Length": "325.0", "Coding Ratio (%)": "84.4", "Number of rRNAs": "1", "Number of tRNAs": "40", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Thioalkalivibrio sulfidiphilus", "strain": "strain=HL-EbGR7", "accession": "GCA_000021985.1", "taxid": 1033854, "species_taxid": 1033854, "relation_to_type": "type", "validated": true, "ani": 77.0457, "matched_fragments": 137, "total_fragments": 812, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiohalobacter thiocyanaticus", "strain": "strain=Hrh1", "accession": "GCA_003932505.1", "taxid": 585455, "species_taxid": 585455, "relation_to_type": "type", "validated": true, "ani": 76.7794, "matched_fragments": 120, "total_fragments": 812, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylogaea oryzae", "strain": "strain=JCM 16910", "accession": "GCA_001312345.1", "taxid": 1295382, "species_taxid": 1295382, "relation_to_type": "type", "validated": true, "ani": 76.6462, "matched_fragments": 74, "total_fragments": 812, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfurivermis fontis", "strain": "strain=JG42", "accession": "GCA_004001245.1", "taxid": 1972068, "species_taxid": 1972068, "relation_to_type": "type", "validated": true, "ani": 76.6199, "matched_fragments": 120, "total_fragments": 812, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioalkalivibrio denitrificans", "strain": "strain=ALJD", "accession": "GCA_002000365.1", "taxid": 108003, "species_taxid": 108003, "relation_to_type": "type", "validated": true, "ani": 76.5243, "matched_fragments": 93, "total_fragments": 812, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioalkalivibrio thiocyanodenitrificans", "strain": "strain=ARhD 1", "accession": "GCA_000378965.1", "taxid": 243063, "species_taxid": 243063, "relation_to_type": "type", "validated": true, "ani": 76.5078, "matched_fragments": 95, "total_fragments": 812, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylogaea oryzae", "strain": "strain=E10", "accession": "GCA_019669985.1", "taxid": 1295382, "species_taxid": 1295382, "relation_to_type": "type", "validated": true, "ani": 76.5061, "matched_fragments": 102, "total_fragments": 812, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiohalocapsa marina", "strain": "strain=DSM 19078", "accession": "GCA_008632335.1", "taxid": 424902, "species_taxid": 424902, "relation_to_type": "type", "validated": true, "ani": 76.2515, "matched_fragments": 106, "total_fragments": 812, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Allochromatium humboldtianum", "strain": "strain=DSM 21881", "accession": "GCA_013385175.1", "taxid": 504901, "species_taxid": 504901, "relation_to_type": "type", "validated": true, "ani": 76.1348, "matched_fragments": 54, "total_fragments": 812, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiohalophilus thiocyanatoxydans", "strain": "strain=DSM 16326", "accession": "GCA_004366735.1", "taxid": 381308, "species_taxid": 381308, "relation_to_type": "type", "validated": true, "ani": 75.9785, "matched_fragments": 75, "total_fragments": 812, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas mangiferae", "strain": "strain=DMKU BBB3-04", "accession": "GCA_007109405.1", "taxid": 2593654, "species_taxid": 2593654, "relation_to_type": "type", "validated": true, "ani": 75.8788, "matched_fragments": 89, "total_fragments": 812, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Plasticicumulans lactativorans", "strain": "strain=DSM 25287", "accession": "GCA_004341245.1", "taxid": 1133106, "species_taxid": 1133106, "relation_to_type": "type", "validated": true, "ani": 75.8111, "matched_fragments": 66, "total_fragments": 812, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiocystis violascens", "strain": "strain=DSM 198", "accession": "GCA_000227745.3", "taxid": 73141, "species_taxid": 73141, "relation_to_type": "type", "validated": true, "ani": 75.7387, "matched_fragments": 60, "total_fragments": 812, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenimonas malthae", "strain": "strain=CC-JY-1", "accession": "GCA_000747075.1", "taxid": 354197, "species_taxid": 354197, "relation_to_type": "type", "validated": true, "ani": 75.6837, "matched_fragments": 64, "total_fragments": 812, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenimonas soli", "strain": "strain=CGMCC 1.15905", "accession": "GCA_014643775.1", "taxid": 2269504, "species_taxid": 2269504, "relation_to_type": "type", "validated": true, "ani": 75.6628, "matched_fragments": 67, "total_fragments": 812, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas delhiensis", "strain": "strain=RLD-1", "accession": "GCA_900187975.1", "taxid": 366289, "species_taxid": 366289, "relation_to_type": "type", "validated": true, "ani": 75.6418, "matched_fragments": 113, "total_fragments": 812, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lalucatii", "strain": "strain=R1b54", "accession": "GCA_018398425.1", "taxid": 1424203, "species_taxid": 1424203, "relation_to_type": "type", "validated": true, "ani": 75.6134, "matched_fragments": 77, "total_fragments": 812, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas delhiensis", "strain": "strain=CCM 7361", "accession": "GCA_900099945.1", "taxid": 366289, "species_taxid": 366289, "relation_to_type": "type", "validated": true, "ani": 75.6108, "matched_fragments": 116, "total_fragments": 812, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas hydrolytica", "strain": "strain=DSWY01", "accession": "GCA_021495345.2", "taxid": 2493633, "species_taxid": 2493633, "relation_to_type": "type", "validated": true, "ani": 75.4679, "matched_fragments": 72, "total_fragments": 812, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas citronellolis", "strain": "strain=LMG 18378", "accession": "GCA_900112375.1", "taxid": 53408, "species_taxid": 53408, "relation_to_type": "type", "validated": true, "ani": 75.4472, "matched_fragments": 115, "total_fragments": 812, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodanobacter denitrificans", "strain": "strain=2APBS1", "accession": "GCA_000230695.3", "taxid": 666685, "species_taxid": 666685, "relation_to_type": "type", "validated": true, "ani": 75.4411, "matched_fragments": 60, "total_fragments": 812, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas 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"GCA_002930645.1", "taxid": 2086571, "species_taxid": 2086571, "relation_to_type": "type", "validated": true, "ani": 75.2735, "matched_fragments": 77, "total_fragments": 812, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 2.08, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_011375345.1", "gtdb_species": "s__DRLM01 sp011375345", "ani": 100.0, "matched_fragments": 804, "total_fragments": 812, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__DRLM01;f__DRLM01;g__DRLM01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_015488555.1", "gtdb_species": "s__S012-109 sp015488555", "ani": 77.1137, "matched_fragments": 135, "total_fragments": 812, "gtdb_taxonomy": 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