{ "type": "genome", "identifier": "GCA_011522745.1", "organism": "Halieaceae bacterium", "title": "Halieaceae bacterium", "description": "derived from metagenome; fragmented assembly; genus undefined", "data type": "Genome sequencing and assembly", "organization": "James Cook University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_011522745.1", "bioproject": "PRJNA594068", "biosample": "SAMN13495027", "wgs_master": "WTIJ00000000.1", "refseq_category": "na", "taxid": "2026743", "species_taxid": "2026743", "organism_name": "Halieaceae bacterium", "infraspecific_name": "", "isolate": "PL36313bin_41", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/03/20", "asm_name": "ASM1152274v1", "submitter": "James Cook University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/522/745/GCA_011522745.1_ASM1152274v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-03-20", "dateModified": "2020-03-20", "datePublished": "2020-03-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Halieaceae bacterium" ], "sample_taxid": [ "2026743" ], "sample_host_organism": [ "plankton" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Australia: Great Barrier Reef, Magnetic Island, Geoffrey Bay" ], "sample_host_location_id": [], "data_size": "0.769 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 79.17, "contamination": 8.33, "strain_heterogeneity": 50.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2627666", "Number of Sequences": "596", "Longest Sequences (bp)": "20810", "N50 (bp)": "4881", "Gap Ratio (%)": "0.064696", "GCcontent (%)": "56.8", "Number of CDSs": "2010", "Average Protein Length": "289.4", "Coding Ratio (%)": "66.4", "Number of rRNAs": "0", "Number of tRNAs": "17", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 79.17, "contamination": 8.33, "strain_heterogeneity": 50.0 }, "gtdb_result": [ { "accession": "GCA_902520195.1", "gtdb_species": "s__Luminiphilus sp902520195", "ani": 81.9645, "matched_fragments": 92, "total_fragments": 530, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Luminiphilus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.03", "min_intra_species_ani": "95.89", "mean_intra_species_af": "0.61", "min_intra_species_af": "0.58", "num_clustered_genomes": 3, "status": "-" }, { "accession": 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