{ "type": "genome", "identifier": "GCA_011525085.1", "organism": "Acidimicrobiales bacterium", "title": "Acidimicrobiales bacterium", "description": "derived from metagenome; fragmented assembly; genus undefined", "data type": "Genome sequencing and assembly", "organization": "James Cook University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_011525085.1", "bioproject": "PRJNA594068", "biosample": "SAMN13494976", "wgs_master": "WTIX00000000.1", "refseq_category": "na", "taxid": "2201156", "species_taxid": "2201156", "organism_name": "Acidimicrobiales bacterium", "infraspecific_name": "", "isolate": "PL36325bin_8", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/03/20", "asm_name": "ASM1152508v1", "submitter": "James Cook University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/525/085/GCA_011525085.1_ASM1152508v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-03-20", "dateModified": "2020-03-20", "datePublished": "2020-03-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Acidimicrobiales bacterium" ], "sample_taxid": [ "2201156" ], "sample_host_organism": [ "plankton" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Australia: Great Barrier Reef, Magnetic Island, Geoffrey Bay" ], "sample_host_location_id": [], "data_size": "0.642 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.67, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2312788", "Number of Sequences": "425", "Longest Sequences (bp)": "30325", "N50 (bp)": "6897", "Gap Ratio (%)": "0.673646", "GCcontent (%)": "66.0", "Number of CDSs": "1842", "Average Protein Length": "302.6", "Coding Ratio (%)": "72.3", "Number of rRNAs": "1", "Number of tRNAs": "39", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Actinomarinicola tropica", "strain": "strain=SCSIO 58843", "accession": "GCA_009650215.1", "taxid": 2789776, "species_taxid": 2789776, "relation_to_type": "type", "validated": true, "ani": 77.0755, "matched_fragments": 113, "total_fragments": 542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhabdothermincola salaria", "strain": "strain=EGI L10124", "accession": "GCA_021246445.1", "taxid": 2903142, "species_taxid": 2903142, "relation_to_type": "type", "validated": true, "ani": 76.8422, "matched_fragments": 113, "total_fragments": 542, "ani_threshold": 95, 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"Ilumatobacter coccineus", "strain": "strain=YM16-304", "accession": "GCA_000348785.1", "taxid": 467094, "species_taxid": 467094, "relation_to_type": "type", "validated": true, "ani": 76.2839, "matched_fragments": 125, "total_fragments": 542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia paraffinivorans", "strain": "strain=NBRC 108238", "accession": "GCA_000344155.1", "taxid": 175628, "species_taxid": 175628, "relation_to_type": "type", "validated": true, "ani": 76.214, "matched_fragments": 58, "total_fragments": 542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desertimonas flava", "strain": "strain=SYSU D60003", "accession": "GCA_003426815.1", "taxid": 2064846, "species_taxid": 2064846, "relation_to_type": "type", "validated": true, "ani": 76.1991, "matched_fragments": 112, "total_fragments": 542, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharopolyspora phatthalungensis", "strain": 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