{ "type": "genome", "identifier": "GCA_011620045.1", "organism": "Mesotoga sp.", "title": "Mesotoga sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory", "publication": [ {} ], "properties": { "assembly_accession": "GCA_011620045.1", "bioproject": "PRJNA592873", "biosample": "SAMN13475833", "wgs_master": "WOZY00000000.1", "refseq_category": "na", "taxid": "2053577", "species_taxid": "2053577", "organism_name": "Mesotoga sp.", "infraspecific_name": "", "isolate": "WOFB36", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/03/23", "asm_name": "ASM1162004v1", "submitter": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/620/045/GCA_011620045.1_ASM1162004v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-03-23", "dateModified": "2020-03-23", "datePublished": "2020-03-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Mesotoga sp." ], "sample_taxid": [ "2053577" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Wietze" ], "sample_host_location_id": [], "data_size": "0.509 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 70.14, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1745902", "Number of Sequences": "317", "Longest Sequences (bp)": "19688", "N50 (bp)": "6139", "Gap Ratio (%)": "0.046967", "GCcontent (%)": "45.8", "Number of CDSs": "1432", "Average Protein Length": "284.5", "Coding Ratio (%)": "70.0", "Number of rRNAs": "0", "Number of tRNAs": "33", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 70.14, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_011620045.1", "gtdb_species": "s__Mesotoga sp011620045", "ani": 100.0, "matched_fragments": 415, "total_fragments": 423, "gtdb_taxonomy": "d__Bacteria;p__Thermotogota;c__Thermotogae;o__Petrotogales;f__Kosmotogaceae;g__Mesotoga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_003228205.1", "gtdb_species": "s__Mesotoga sp003228205", "ani": 93.4343, "matched_fragments": 258, "total_fragments": 423, "gtdb_taxonomy": "d__Bacteria;p__Thermotogota;c__Thermotogae;o__Petrotogales;f__Kosmotogaceae;g__Mesotoga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.84", "min_intra_species_ani": "95.51", "mean_intra_species_af": "0.62", "min_intra_species_af": "0.54", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_003664995.1", "gtdb_species": "s__Mesotoga sp003664995", "ani": 90.1771, "matched_fragments": 395, "total_fragments": 423, "gtdb_taxonomy": "d__Bacteria;p__Thermotogota;c__Thermotogae;o__Petrotogales;f__Kosmotogaceae;g__Mesotoga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.98", "min_intra_species_ani": "98.98", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_011045915.1", "gtdb_species": "s__Mesotoga infera_D", "ani": 88.4837, "matched_fragments": 327, "total_fragments": 423, "gtdb_taxonomy": "d__Bacteria;p__Thermotogota;c__Thermotogae;o__Petrotogales;f__Kosmotogaceae;g__Mesotoga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002752635.1", "gtdb_species": "s__Mesotoga sp002752635", "ani": 83.2499, "matched_fragments": 277, "total_fragments": 423, "gtdb_taxonomy": "d__Bacteria;p__Thermotogota;c__Thermotogae;o__Petrotogales;f__Kosmotogaceae;g__Mesotoga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.07", "min_intra_species_ani": "97.29", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.81", "num_clustered_genomes": 15, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": 0.067, "cell_length": 0.367, "doubling_h": null, "growth_tmp": 45.0, "optimum_tmp": 43.333, "optimum_ph": 7.4, "genome_size": 3058345.0, "gc_content": 48.3, "coding_genes": 2809.0, "rRNA16S_genes": null, "tRNA_genes": 46.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Thermotogota", "c__Thermotogae", "o__Petrotogales", "f__Kosmotogaceae", "g__Mesotoga", "s__Mesotoga sp011620045" ], "_genome_taxon": [ "Mesotoga", "sp.", "d__Bacteria", "p__Thermotogota", "c__Thermotogae", "o__Petrotogales", "f__Kosmotogaceae", "g__Mesotoga", "s__Mesotoga sp011620045", "Bacteria", "Thermotogota", "Thermotogae", "Petrotogales", "Kosmotogaceae", "Mesotoga", "Mesotoga", "sp011620045" ], "_meo": [ { "id": "MEO_0000007", "label": "soil" }, { "id": "MEO_0001474", "label": "oil associated feature" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }