{ "type": "genome", "identifier": "GCA_011620705.1", "organism": "Microbacteriaceae bacterium", "title": "Microbacteriaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory", "publication": [ {} ], "properties": { "assembly_accession": "GCA_011620705.1", "bioproject": "PRJNA592873", "biosample": "SAMN13475800", "wgs_master": "WOYR00000000.1", "refseq_category": "na", "taxid": "1873462", "species_taxid": "1873462", "organism_name": "Microbacteriaceae bacterium", "infraspecific_name": "", "isolate": "WOFB03", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/03/23", "asm_name": "ASM1162070v1", "submitter": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/620/705/GCA_011620705.1_ASM1162070v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-03-23", "dateModified": "2020-03-23", "datePublished": "2020-03-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Microbacteriaceae bacterium" ], "sample_taxid": [ "1873462" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Wietze" ], "sample_host_location_id": [], "data_size": "0.578 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 76.79, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2115323", "Number of Sequences": "281", "Longest Sequences (bp)": "47835", "N50 (bp)": "9215", "Gap Ratio (%)": "0.393321", "GCcontent (%)": "69.6", "Number of CDSs": "1821", "Average Protein Length": "304.1", "Coding Ratio (%)": "78.5", "Number of rRNAs": "1", "Number of tRNAs": "24", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Protaetiibacter intestinalis", "strain": "strain=2DFWR-13", "accession": "GCA_003627075.1", "taxid": 2419774, "species_taxid": 2419774, "relation_to_type": "type", "validated": true, "ani": 79.7656, "matched_fragments": 318, "total_fragments": 563, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Protaetiibacter larvae", "strain": "strain=KACC 19322", "accession": "GCA_008365275.1", "taxid": 2592654, "species_taxid": 2592654, "relation_to_type": "type", "validated": true, "ani": 79.6667, "matched_fragments": 305, "total_fragments": 563, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clavibacter californiensis", "strain": "strain=CFBP 8216", "accession": "GCA_003576155.1", "taxid": 1401995, "species_taxid": 1401995, "relation_to_type": "type", "validated": true, "ani": 78.5159, "matched_fragments": 177, "total_fragments": 563, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Galbitalea soli", "strain": "strain=NBRC 108727", "accession": "GCA_010686725.1", "taxid": 1268042, "species_taxid": 1268042, "relation_to_type": "type", "validated": true, "ani": 78.5041, "matched_fragments": 245, "total_fragments": 563, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Galbitalea soli", "strain": "strain=DSM 105515", "accession": "GCA_013410525.1", "taxid": 1268042, "species_taxid": 1268042, "relation_to_type": "type", "validated": true, "ani": 78.5001, "matched_fragments": 245, "total_fragments": 563, "ani_threshold": 95, "status": "below_threshold" }, { 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"strain=LMG7333", "accession": "GCA_021216655.1", "taxid": 28447, "species_taxid": 28447, "relation_to_type": "suspected-type", "validated": true, "ani": 78.2827, "matched_fragments": 214, "total_fragments": 563, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces mariniharenae", "strain": "strain=NEAU-184", "accession": "GCA_008122505.1", "taxid": 2604423, "species_taxid": 2604423, "relation_to_type": "type", "validated": true, "ani": 78.226, "matched_fragments": 250, "total_fragments": 563, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gryllotalpicola protaetiae", "strain": "strain=2DFW10M-5", "accession": "GCA_003627055.1", "taxid": 2419771, "species_taxid": 2419771, "relation_to_type": "type", "validated": true, "ani": 78.1733, "matched_fragments": 214, "total_fragments": 563, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clavibacter michiganensis subsp. tessellarius", "strain": "strain=ATCC 33566", "accession": "GCA_021922985.1", "taxid": 31965, "species_taxid": 28447, "relation_to_type": "type", "validated": true, "ani": 78.1198, "matched_fragments": 219, "total_fragments": 563, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Herbiconiux moechotypicola", "strain": "strain=KCTC 19653", "accession": "GCA_024979255.1", "taxid": 637393, "species_taxid": 637393, "relation_to_type": "type", "validated": true, "ani": 78.1027, "matched_fragments": 237, "total_fragments": 563, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clavibacter michiganensis subsp. tessellarius", "strain": "strain=ATCC 33566", "accession": "GCA_002240635.1", "taxid": 31965, "species_taxid": 28447, "relation_to_type": "type", "validated": true, "ani": 78.0969, "matched_fragments": 219, "total_fragments": 563, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clavibacter californiensis", "strain": "strain=CFBP 8216", "accession": 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