{
    "type": "genome",
    "identifier": "GCA_011620795.1",
    "organism": "Methanoculleus sp.",
    "title": "Methanoculleus sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_011620795.1",
        "bioproject": "PRJNA592873",
        "biosample": "SAMN13475794",
        "wgs_master": "WOYL00000000.1",
        "refseq_category": "na",
        "taxid": "90427",
        "species_taxid": "90427",
        "organism_name": "Methanoculleus sp.",
        "infraspecific_name": "",
        "isolate": "WOFA03",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/03/23",
        "asm_name": "ASM1162079v1",
        "submitter": "Genomic and Applied Microbiology & Goettingen Genomics Laboratory",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/620/795/GCA_011620795.1_ASM1162079v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-03-23",
    "dateModified": "2020-03-23",
    "datePublished": "2020-03-23",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Methanoculleus sp."
        ],
        "sample_taxid": [
            "90427"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Germany: Wietze"
        ],
        "sample_host_location_id": [],
        "data_size": "0.672 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2373636",
        "Number of Sequences": "219",
        "Longest Sequences (bp)": "62550",
        "N50 (bp)": "14952",
        "Gap Ratio (%)": "0.130601",
        "GCcontent (%)": "62.1",
        "Number of CDSs": "2300",
        "Average Protein Length": "287.0",
        "Coding Ratio (%)": "83.4",
        "Number of rRNAs": "2",
        "Number of tRNAs": "41",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Methanoculleus marisnigri",
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                "accession": "GCA_000015825.1",
                "taxid": 2198,
                "species_taxid": 2198,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 551,
                "total_fragments": 679,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methanoculleus sediminis",
                "strain": "strain=S3Fa",
                "accession": "GCA_001017125.1",
                "taxid": 1550566,
                "species_taxid": 1550566,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.4675,
                "matched_fragments": 549,
                "total_fragments": 679,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methanoculleus chikugoensis",
                "strain": "strain=MG62",
                "accession": "GCA_019669965.1",
                "taxid": 118126,
                "species_taxid": 118126,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.3683,
                "matched_fragments": 541,
                "total_fragments": 679,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methanoculleus horonobensis",
                "strain": "strain=T10",
                "accession": "GCA_001602375.1",
                "taxid": 528314,
                "species_taxid": 528314,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.2433,
                "matched_fragments": 551,
                "total_fragments": 679,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methanoculleus chikugoensis",
                "strain": "strain=JCM 10825",
                "accession": "GCA_001315965.1",
                "taxid": 118126,
                "species_taxid": 118126,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.6054,
                "matched_fragments": 443,
                "total_fragments": 679,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methanoculleus bourgensis",
                "strain": "strain=MS2T",
                "accession": "GCA_000304355.2",
                "taxid": 83986,
                "species_taxid": 83986,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.2588,
                "matched_fragments": 516,
                "total_fragments": 679,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_002503885.1",
                "gtdb_species": "s__Methanoculleus marisnigri_B",
                "ani": 97.7849,
                "matched_fragments": 573,
                "total_fragments": 679,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoculleaceae;g__Methanoculleus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.96",
                "min_intra_species_ani": "97.72",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 6,
                "status": "conclusive"
            },
            {
                "accession": "GCA_002839645.1",
                "gtdb_species": "s__Methanoculleus sp002839645",
                "ani": 93.9148,
                "matched_fragments": 572,
                "total_fragments": 679,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoculleaceae;g__Methanoculleus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016841385.1",
                "gtdb_species": "s__Methanoculleus sp016841385",
                "ani": 90.5789,
                "matched_fragments": 446,
                "total_fragments": 679,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoculleaceae;g__Methanoculleus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016841955.1",
                "gtdb_species": "s__Methanoculleus sp016841955",
                "ani": 89.2362,
                "matched_fragments": 545,
                "total_fragments": 679,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoculleaceae;g__Methanoculleus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.79",
                "min_intra_species_ani": "99.79",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_018433835.1",
                "gtdb_species": "s__Methanoculleus sp018433835",
                "ani": 88.6883,
                "matched_fragments": 569,
                "total_fragments": 679,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoculleaceae;g__Methanoculleus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.52",
                "min_intra_species_ani": "99.38",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_002501655.1",
                "gtdb_species": "s__Methanoculleus sp002501655",
                "ani": 86.8518,
                "matched_fragments": 485,
                "total_fragments": 679,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoculleaceae;g__Methanoculleus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000015825.1",
                "gtdb_species": "s__Methanoculleus marisnigri",
                "ani": 86.6834,
                "matched_fragments": 551,
                "total_fragments": 679,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoculleaceae;g__Methanoculleus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000691865.1",
                "gtdb_species": "s__Methanoculleus sp000691865",
                "ani": 86.5635,
                "matched_fragments": 510,
                "total_fragments": 679,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoculleaceae;g__Methanoculleus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002506585.1",
                "gtdb_species": "s__Methanoculleus sp002506585",
                "ani": 86.3478,
                "matched_fragments": 548,
                "total_fragments": 679,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoculleaceae;g__Methanoculleus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.042,
        "cell_length": -0.042,
        "doubling_h": 0.977,
        "growth_tmp": 40.952,
        "optimum_tmp": 40.204,
        "optimum_ph": 6.907,
        "genome_size": 2441843.114,
        "gc_content": 60.765,
        "coding_genes": 2468.875,
        "rRNA16S_genes": 1.0,
        "tRNA_genes": 48.166,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 0.5,
        "thermophilic_range_tmp": 0.5,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Archaea",
        "p__Halobacteriota",
        "c__Methanomicrobia",
        "o__Methanomicrobiales",
        "f__Methanoculleaceae",
        "g__Methanoculleus",
        "s__Methanoculleus marisnigri_B"
    ],
    "_genome_taxon": [
        "Methanoculleus",
        "sp.",
        "d__Archaea",
        "p__Halobacteriota",
        "c__Methanomicrobia",
        "o__Methanomicrobiales",
        "f__Methanoculleaceae",
        "g__Methanoculleus",
        "s__Methanoculleus marisnigri_B",
        "Archaea",
        "Halobacteriota",
        "Methanomicrobia",
        "Methanomicrobiales",
        "Methanoculleaceae",
        "Methanoculleus",
        "Methanoculleus",
        "marisnigri",
        "B"
    ],
    "_meo": [
        {
            "id": "MEO_0000007",
            "label": "soil"
        },
        {
            "id": "MEO_0001474",
            "label": "oil associated feature"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}